BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0552100 Os05g0552100|AK101673
         (712 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0552100  Conserved hypothetical protein                     1421   0.0  
Os01g0687300  Conserved hypothetical protein                      428   e-120

>Os05g0552100 Conserved hypothetical protein
          Length = 712

 Score = 1421 bits (3679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 695/712 (97%), Positives = 695/712 (97%)

Query: 1   MSDPGEPSKHSQWMSHWTKGSSSAEPQVGRSNDSPEDAKYDICEDNSGPSNFEIMKSRLF 60
           MSDPGEPSKHSQWMSHWTKGSSSAEPQVGRSNDSPEDAKYDICEDNSGPSNFEIMKSRLF
Sbjct: 1   MSDPGEPSKHSQWMSHWTKGSSSAEPQVGRSNDSPEDAKYDICEDNSGPSNFEIMKSRLF 60

Query: 61  ERLMVGISQERASLEHGQKLNSNMKVVVKDARRHAVQNQIDQGDGPIQKSVMQKDVLYAK 120
           ERLMVGISQERASLEHGQKLNSNMKVVVKDARRHAVQNQIDQGDGPIQKSVMQKDVLYAK
Sbjct: 61  ERLMVGISQERASLEHGQKLNSNMKVVVKDARRHAVQNQIDQGDGPIQKSVMQKDVLYAK 120

Query: 121 AVVSKSLSIQKLSELSVDCQKLAGSDDLSSEWNHFPMLAINRKIDSILNPKRKSAKSTGP 180
           AVVSKSLSIQKLSELSVDCQKLAGSDDLSSEWNHFPMLAINRKIDSILNPKRKSAKSTGP
Sbjct: 121 AVVSKSLSIQKLSELSVDCQKLAGSDDLSSEWNHFPMLAINRKIDSILNPKRKSAKSTGP 180

Query: 181 NDVFVPKQTLKLNMTTANLMAFSSQEYELHSHRTTDETMDHCKHAGGIVSRLEDHAGVML 240
           NDVFVPKQTLKLNMTTANLMAFSSQEYELHSHRTTDETMDHCKHAGGIVSRLEDHAGVML
Sbjct: 181 NDVFVPKQTLKLNMTTANLMAFSSQEYELHSHRTTDETMDHCKHAGGIVSRLEDHAGVML 240

Query: 241 NPAEQKLKGQLLPATXXXXXXXXXXXXXXXXXEQHTSRYIADSDQEPTCRSREKRLKSSE 300
           NPAEQKLKGQLLPAT                 EQHTSRYIADSDQEPTCRSREKRLKSSE
Sbjct: 241 NPAEQKLKGQLLPATSCSCSKDDSNSSDSLLDEQHTSRYIADSDQEPTCRSREKRLKSSE 300

Query: 301 NNDTNCKIGSCSQNQKSRAPGHHKHKGSAGVMFRTSVPGKEFEAAEINCSDKINQRHLNT 360
           NNDTNCKIGSCSQNQKSRAPGHHKHKGSAGVMFRTSVPGKEFEAAEINCSDKINQRHLNT
Sbjct: 301 NNDTNCKIGSCSQNQKSRAPGHHKHKGSAGVMFRTSVPGKEFEAAEINCSDKINQRHLNT 360

Query: 361 QRIVSAANVTGSCIPDPAADISTVNGRGEAVTQPSSISGDSTKRKAPYLFEMLTIPSKAQ 420
           QRIVSAANVTGSCIPDPAADISTVNGRGEAVTQPSSISGDSTKRKAPYLFEMLTIPSKAQ
Sbjct: 361 QRIVSAANVTGSCIPDPAADISTVNGRGEAVTQPSSISGDSTKRKAPYLFEMLTIPSKAQ 420

Query: 421 NMNPEDSLPSGNSTAFGVHMYGTNIGSHLFGANNKSSTETEILSGDSQHVSKSSAGIASL 480
           NMNPEDSLPSGNSTAFGVHMYGTNIGSHLFGANNKSSTETEILSGDSQHVSKSSAGIASL
Sbjct: 421 NMNPEDSLPSGNSTAFGVHMYGTNIGSHLFGANNKSSTETEILSGDSQHVSKSSAGIASL 480

Query: 481 LAQKAKSEQLATLYMKGASGCNVNEHQGVSSKAIVANKQQCYNPRTARMDLDLMQFQLSR 540
           LAQKAKSEQLATLYMKGASGCNVNEHQGVSSKAIVANKQQCYNPRTARMDLDLMQFQLSR
Sbjct: 481 LAQKAKSEQLATLYMKGASGCNVNEHQGVSSKAIVANKQQCYNPRTARMDLDLMQFQLSR 540

Query: 541 MRNQESQARTEPGDRWLKRLQIDSKDPHHLPCSKRSKAGDGSGRPVTGGASSMAPRCDGS 600
           MRNQESQARTEPGDRWLKRLQIDSKDPHHLPCSKRSKAGDGSGRPVTGGASSMAPRCDGS
Sbjct: 541 MRNQESQARTEPGDRWLKRLQIDSKDPHHLPCSKRSKAGDGSGRPVTGGASSMAPRCDGS 600

Query: 601 NDDDDIVDRDHKEEQGLDEGVEIQGGREASPVPAKSDDRWIGRWCQGGVPVYHEDDHDQR 660
           NDDDDIVDRDHKEEQGLDEGVEIQGGREASPVPAKSDDRWIGRWCQGGVPVYHEDDHDQR
Sbjct: 601 NDDDDIVDRDHKEEQGLDEGVEIQGGREASPVPAKSDDRWIGRWCQGGVPVYHEDDHDQR 660

Query: 661 KEVTKPDLAAGDSGGLEGQFPSIKAMAMMGRAMSKVRPCQEERRGSFMVWKA 712
           KEVTKPDLAAGDSGGLEGQFPSIKAMAMMGRAMSKVRPCQEERRGSFMVWKA
Sbjct: 661 KEVTKPDLAAGDSGGLEGQFPSIKAMAMMGRAMSKVRPCQEERRGSFMVWKA 712



>Os01g0687300 Conserved hypothetical protein
          Length = 764

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 287/764 (37%), Positives = 419/764 (54%), Gaps = 77/764 (10%)

Query: 2   SDPGEPS--KHSQWMSHWTKGSSSAEPQVGRSNDSP----EDAKYDICEDNSGPSNFEIM 55
           SD GE S  KHS WM+HW + S S EPQ G+S  SP    +D  Y     + G   FE+M
Sbjct: 22  SDVGESSYHKHSLWMAHWARSSISPEPQNGQSC-SPLKEIDDVGYS---KDCGALPFELM 77

Query: 56  KSRLFERLMVGISQERASLEHGQKLNSNMKVVVKDARRHAVQNQIDQGDGPIQKSVMQKD 115
           K+R+ ERLMVG+S    S  + ++ ++NM+ V +D  +      +DQ     + SVMQK+
Sbjct: 78  KARVAERLMVGVSHGGVSAGNTRQFSTNMRGVARDVCQEVQCKNVDQMGSSFESSVMQKN 137

Query: 116 V-LYA-KAVVSKSLSIQKLSELSVDCQKLAGSDDLSSEWNHFPMLAINRKIDSILNPKRK 173
           V LYA K VVS+  S+ K+S++ VD +KL G+++LSSEWNHFPM  INRKIDSILNP R+
Sbjct: 138 VNLYAAKTVVSERYSVHKISDILVDSRKLCGTENLSSEWNHFPMFEINRKIDSILNP-RR 196

Query: 174 SAKSTGPNDVFVPKQTLKLNMTTANLMAFSSQEYELHSHRTTDETMDHCKHAGGIVSRLE 233
           SA  T    +FVP++++K+NM+T+N+M+FSS+EY+LH+H+ TDE    CK A G++S L+
Sbjct: 197 SALVTSSEKIFVPQKSVKINMSTSNVMSFSSKEYQLHTHQVTDENR-QCKSARGMLSHLD 255

Query: 234 DHAGVMLNPAEQKLKGQLLPATXXXXXXXXXXXXXXXXXEQHTSRYIADSDQEPTCRSRE 293
           ++ G+  + A +KLKG L                     E H   YI +S + P    + 
Sbjct: 256 NYTGLNSDHAGKKLKGHLSIEEPCSCSKDDTDSSCSLADEHHARHYIPNSKKSPHRSCKN 315

Query: 294 KRLKSSENNDTNCKIGSCSQNQKSRAPGHHKHKGSAGVMFRTSVPGKEFEAAEINCSDKI 353
             + S+   +     GS  +++        K +   GV F  S   +E++   +  +   
Sbjct: 316 SSVYSASKMENQFVEGSLLEHKSEVYGACKKKQHLEGVAFHESALHREYQIKSVKTTAIT 375

Query: 354 N--------------------QRHLNTQRIVSAANVTGSC-IPDPAADISTVNGRGEAVT 392
           N                    Q++LN     SA N+T SC  PD       +  + E++ 
Sbjct: 376 NEGDMDTNGHHVDFGNLLQSDQQYLNKHTEDSAVNLTESCKTPDAIDSAMILKSKDESLA 435

Query: 393 QPSSISGD--STKRKAPYLFEMLTIPSKAQNMNPEDSLPSGNSTAFGVHMYGTNIGSHLF 450
           Q    +      KRK P LFEM T P+K+      D   SG S          N+ S L 
Sbjct: 436 QEKRTNNKLIDNKRKGPCLFEMFTQPTKSNVKCSIDRTSSGKSCG--------NMTSGLL 487

Query: 451 GANNKSSTETEILSGDSQHVSKSSAGIASLLAQK-------AKSEQLATLYMKGASGCN- 502
           GA  + ST+T+    ++ H SKS+AG AS   QK       AK+EQL T  +KG S  + 
Sbjct: 488 GAQKQFSTKTDTFYSEAHHASKSTAGFASASMQKDLGYPSSAKTEQLVTSSVKGVSSGSK 547

Query: 503 ----VN---EHQGVSSKAIVANKQQCYNPRTARMDLDLMQFQLSRMRN------QESQAR 549
               VN   EH+    KA  AN Q+    +T+ M+LDL+ FQ+SR++N       ES A 
Sbjct: 548 GNEAVNTSAEHRDFYPKATCANNQEWSMSKTSSMNLDLVLFQISRLKNPIPNALNESPAC 607

Query: 550 TEPGDRWLKRLQIDSKDPHHLPCSKRSKAGDGSGRPVTGGASSMAPRC-DGSNDDDDIVD 608
            +P ++WLKRLQ D+ D  H+PCSK+ K GDG   P+ GG  ++  +  D  +D   ++ 
Sbjct: 608 PDPSEKWLKRLQHDTSDS-HVPCSKKPKVGDG---PLAGGTCTVFGQVFDCDSDSTGMI- 662

Query: 609 RDHKEEQGLDEGVEIQGGREASPVPAKSDDRWIGRWCQGGVPVYHEDDHDQRKEVTKPDL 668
            +H + + + +G+  Q  +E SP+ AKS +RWIGRWC+GG PV+H   + +R+E  K  +
Sbjct: 663 -NHVKNKLICKGLTDQQSQEGSPMSAKSLNRWIGRWCRGGTPVFHGTSNLERQEA-KSGM 720

Query: 669 AAGDSGGLEGQFPSIKAMAMMGRAMSKVRPCQEERRGSFMVWKA 712
            + D   LEGQFPSI AMAMMGR M+K+RPC+ ++RG  +VW+ 
Sbjct: 721 PSDD---LEGQFPSIAAMAMMGRVMNKLRPCELQKRGPSVVWRT 761



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,055,102
Number of extensions: 1102048
Number of successful extensions: 2862
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2846
Number of HSP's successfully gapped: 2
Length of query: 712
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 604
Effective length of database: 11,396,689
Effective search space: 6883600156
Effective search space used: 6883600156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)