Os05g0552100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0552100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.52 | 0.434 | 9.88 | 0.41 | 1.85 | -0.836 | 0.459 | 0.985 | 0.382 | 7.32 | 10.56 | 83 | -- | -- |
| 89.31 | 0.44 | 9.88 | 0.447 | 1.8 | -0.853 | 1.07 | -- | 0.392 | 7.41 | 10.44 | 121 | -- | -- |
| 86.03 | 0.432 | 9.88 | 0.418 | 1.84 | -0.841 | -- | 1.09 | 0.38 | 7.31 | 10.46 | 88 | -- | -- |
| 91.5 | 0.446 | 9.88 | 0.459 | 1.79 | -0.859 | -- | -- | 0.383 | 7.38 | 10.57 | 121 | -- | -- |
| 122.78 | 0.516 | 9.93 | 0.528 | -- | -1.85 | -- | 1.59 | 0.521 | -- | 2.096 | 687 | -- | -- |
| 110.27 | 0.492 | 9.91 | 0.328 | 1.9 | -- | 0.284 | -- | 0.306 | 5.69 | -- | -- | -- | -- |
| 110.46 | 0.492 | 9.91 | 0.33 | 1.9 | -- | -- | -- | 0.305 | 5.67 | -- | -- | -- | -- |
| 111.55 | 0.492 | 9.91 | 0.44 | -- | -2.16 | -- | -- | 0.421 | -- | 1.6 | 686 | -- | -- |
| 96.78 | 0.458 | 9.89 | -- | 1.82 | -0.771 | -- | -- | 0.345 | 7.08 | 14.18 | 86 | -- | -- |
| 297.82 | 0.806 | 9.94 | 0.39 | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
| 113.33 | 0.498 | 9.92 | -- | 1.91 | -- | -- | -- | 0.268 | 5.66 | -- | -- | -- | -- |
| 116.56 | 0.503 | 9.92 | -- | -- | -2.22 | -- | -- | 0.396 | -- | 2.05 | 678 | -- | -- |
| 301.84 | 0.811 | 9.95 | -- | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.64 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 9 |
| 29 | 83.01 | humidity | 80 | 30 | < th | dose independent | rect. | 9 | 8 |
| 30 | 83.16 | radiation | 10 | 90 | > th | dose independent | sin | 23 | NA |
| 31 | 83.33 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 10 |
| 57 | 84.38 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 58 | 84.41 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 63 | 84.91 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 67 | 85.07 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 8 |
| 75 | 85.41 | humidity | 70 | 30 | > th | dose independent | rect. | 4 | 16 |
| 76 | 85.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 98 | 85.89 | radiation | 30 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 100 | 85.94 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 180 | 85.97 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 10 |
| 213 | 86.64 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 225 | 86.93 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 246 | 87.28 | humidity | 50 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 258 | 87.44 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 17 | 16 |
| 267 | 87.51 | humidity | 80 | 90 | < th | dose independent | sin | 2 | NA |
| 273 | 87.59 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 274 | 87.59 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 295 | 87.67 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 296 | 87.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 314 | 87.74 | radiation | 20 | 90 | < th | dose dependent | sin | 22 | NA |
| 328 | 87.78 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 18 |
| 334 | 87.89 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 338 | 87.92 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 340 | 87.93 | radiation | 10 | 90 | > th | dose independent | rect. | 15 | 23 |
| 354 | 88.03 | radiation | 20 | 90 | < th | dose independent | rect. | 2 | 23 |
| 360 | 88.06 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 407 | 88.22 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 7 |
| 408 | 88.22 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 21 |
| 419 | 88.27 | radiation | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 423 | 88.29 | radiation | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 429 | 88.32 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 432 | 88.34 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 8 |
| 446 | 88.39 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 19 |
| 463 | 88.53 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 16 |
| 468 | 88.57 | radiation | 20 | 30 | < th | dose independent | rect. | 17 | 23 |
| 470 | 88.59 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 17 |
| 513 | 88.75 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 12 |
| 514 | 88.75 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 17 |
| 557 | 88.94 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 21 |
| 593 | 89.02 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 596 | 89.03 | humidity | 90 | 30 | < th | dose dependent | sin | 1 | NA |
| 764 | 89.23 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 769 | 89.24 | radiation | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 799 | 89.30 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 825 | 89.34 | wind | 1 | 270 | > th | dose independent | rect. | 15 | 15 |
| 834 | 89.39 | radiation | 30 | 270 | < th | dose independent | rect. | 15 | 15 |
| 875 | 89.44 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 8 |
| 879 | 89.45 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 942 | 89.47 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 970 | 89.56 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 8 |