BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0552100 Os05g0552100|AK101673
         (712 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16365.1  | chr2:7074940-7079181 FORWARD LENGTH=779             49   9e-06
>AT2G16365.1 | chr2:7074940-7079181 FORWARD LENGTH=779
          Length = 778

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 50/183 (27%)

Query: 547 QARTEPGDRWLKRLQI---DSKDPHHLPCSKRSKAGDGSG-----RPVTGGASSMAPRCD 598
           +   E   RW+KRL+    DS +   +   K +  G+          +  G +++ PR  
Sbjct: 302 EPEVEASSRWVKRLKTSPSDSSETKSMMKMKEASLGEKENNNLFLEILKSGINNLQPR-- 359

Query: 599 GSNDDDDIVDRDHKEEQGLDEGVEIQGGREASPVPAKSDDRWIGRWCQGGVPVYHEDDHD 658
              + + +V + +   QG D+   +                WI RWC             
Sbjct: 360 ---NQEPVVSQSNDLRQGGDDITLLHP--------------WIQRWC------------- 389

Query: 659 QRKEVTKPDLAAGDSGGLE---------GQFPSIKAMAMMGRAMSKVRPCQEERRGSFMV 709
            +K+ T  D   G     E          Q+PSI AMA+MG+A+S + P    +  S MV
Sbjct: 390 -KKKTTSTDQPTGQEASFEPESHKEFEKKQYPSIAAMALMGKALSGLNPYGLRKTNSLMV 448

Query: 710 WKA 712
           W A
Sbjct: 449 WNA 451
  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,549,066
Number of extensions: 661065
Number of successful extensions: 1608
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1607
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 606
Effective length of database: 8,200,473
Effective search space: 4969486638
Effective search space used: 4969486638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 115 (48.9 bits)