BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0551600 Os05g0551600|Os05g0551600
(275 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0551600 Protein of unknown function DUF1639 family pro... 397 e-111
Os01g0688600 Protein of unknown function DUF1639 family pro... 113 2e-25
>Os05g0551600 Protein of unknown function DUF1639 family protein
Length = 275
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/265 (75%), Positives = 201/265 (75%)
Query: 11 DHHTXXXXXXXXXXXXXXXXTRTRLHSFSFPTTFGWGTHRLLRCSKNGDXXXXXXXXXKQ 70
DHHT TRTRLHSFSFPTTFGWGTHRLLRCSKNGD KQ
Sbjct: 11 DHHTAQAKSSPSAAPPAGSATRTRLHSFSFPTTFGWGTHRLLRCSKNGDSAPASASPPKQ 70
Query: 71 PHTPSPEKGQETSAGGASRPSRPWNLRTRRSATVAPDASRSEXXXXXXXXXXXXXXXXXX 130
PHTPSPEKGQETSAGGASRPSRPWNLRTRRSATVAPDASRSE
Sbjct: 71 PHTPSPEKGQETSAGGASRPSRPWNLRTRRSATVAPDASRSEAAGKKAAAAAGGGQALLH 130
Query: 131 XXXXXXXXXXXRGFSVALTREEIVADFIAIRGTAXXXXXXXXXXAVRLELDRLYPGLSLA 190
RGFSVALTREEIVADFIAIRGTA AVRLELDRLYPGLSLA
Sbjct: 131 PPAPLPVVAKKRGFSVALTREEIVADFIAIRGTAPPRRPKKRPRAVRLELDRLYPGLSLA 190
Query: 191 DVNLDSYKIVEEIEGKRCSFGFSAGHISCLELDIDTEENESVLGVQQSGLKREKEISASE 250
DVNLDSYKIVEEIEGKRCSFGFSAGHISCLELDIDTEENESVLGVQQSGLKREKEISASE
Sbjct: 191 DVNLDSYKIVEEIEGKRCSFGFSAGHISCLELDIDTEENESVLGVQQSGLKREKEISASE 250
Query: 251 IQNGKIIANFQLRKVLAGINYLFQN 275
IQNGKIIANFQLRKVLAGINYLFQN
Sbjct: 251 IQNGKIIANFQLRKVLAGINYLFQN 275
>Os01g0688600 Protein of unknown function DUF1639 family protein
Length = 207
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 89/180 (49%), Gaps = 24/180 (13%)
Query: 31 TRTRLHSFSFPTTFGWGTHRLLRCSKNGDXXXXXXXXXKQPHTPSPEKGQ------ETSA 84
+RTRLHSFSFPT WGTHRLLRCSKN TPSP+K + +
Sbjct: 42 SRTRLHSFSFPT-LSWGTHRLLRCSKNPASSPPPAAPD----TPSPDKEKAAHRSTDGVG 96
Query: 85 GGASR---PSRPWNLRTRRSATVAPDASRSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 141
GG S P RPWNLRTRRSAT AP S+
Sbjct: 97 GGCSPQRGPQRPWNLRTRRSATAAPRPEGSD----------DAADAAPDRAPSPLAATKK 146
Query: 142 RGFSVALTREEIVADFIAIRGTAXXXXXXXXXXAVRLELDRLYPGLSLADVNLDSYKIVE 201
R FS+ L++EEI DF AIRGT V+ +LD LYPGL LAD+ ++YKI E
Sbjct: 147 RVFSIVLSKEEIGQDFKAIRGTRPPRRPKKRPRTVQRQLDLLYPGLCLADLTPETYKIEE 206
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,552,672
Number of extensions: 218202
Number of successful extensions: 671
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)