Os01g0688600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1639 family protein.
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Os01g0688600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1639 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.45 | 0.371 | 12.7 | 0.217 | 0.883 | 0.453 | -0.747 | 1.01 | 0.0931 | 21.7 | 20 | 553 | -- | -- |
| 64.25 | 0.373 | 12.8 | 0.0934 | 0.879 | 0.398 | -0.647 | -- | 0.0278 | 21.5 | 21.2 | 755 | -- | -- |
| 63.99 | 0.373 | 12.7 | 0.258 | 0.921 | 0.418 | -- | 0.878 | 0.0804 | 21.5 | 21.29 | 2089 | -- | -- |
| 64.68 | 0.375 | 12.8 | 0.0731 | 0.882 | 0.361 | -- | -- | 0.0364 | 21.5 | 21.3 | 746 | -- | -- |
| 112.62 | 0.494 | 12.7 | 0.215 | -- | 0.561 | -- | 0.902 | 0.0263 | -- | 21.45 | 2229 | -- | -- |
| 67.92 | 0.386 | 12.8 | 0.181 | 0.94 | -- | -0.475 | -- | 0.124 | 21.6 | -- | -- | -- | -- |
| 68.76 | 0.388 | 12.8 | 0.199 | 0.943 | -- | -- | -- | 0.125 | 21.6 | -- | -- | -- | -- |
| 100.9 | 0.468 | 12.8 | -0.00397 | -- | 0.677 | -- | -- | -0.107 | -- | 25.3 | 739 | -- | -- |
| 64.78 | 0.375 | 12.8 | -- | 0.877 | 0.367 | -- | -- | 0.0188 | 21.6 | 21.26 | 745 | -- | -- |
| 121.26 | 0.515 | 12.7 | 0.206 | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
| 69.8 | 0.391 | 12.8 | -- | 0.943 | -- | -- | -- | 0.103 | 21.6 | -- | -- | -- | -- |
| 100.88 | 0.468 | 12.8 | -- | -- | 0.672 | -- | -- | -0.121 | -- | 25.27 | 740 | -- | -- |
| 122.38 | 0.516 | 12.7 | -- | -- | -- | -- | -- | 0.0996 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.13 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 2 | 59.74 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 8 | 59.75 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 36 | 60.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 37 | 60.19 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 39 | 60.22 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 100 | 60.42 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 112 | 60.49 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 123 | 60.69 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 165 | 60.75 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 175 | 60.78 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 186 | 61.00 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 189 | 61.01 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 215 | 61.20 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 221 | 61.23 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 223 | 61.29 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 233 | 61.39 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 248 | 61.47 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 266 | 61.55 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 20 |
| 270 | 61.58 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 272 | 61.60 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 275 | 61.61 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 280 | 61.66 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 5 |
| 281 | 61.68 | temperature | 20.0 | 720 | < th | dose independent | sin | 21 | NA |
| 300 | 61.81 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 23 |
| 314 | 61.86 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 333 | 61.89 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 343 | 61.92 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 348 | 61.93 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 18 |
| 349 | 61.94 | temperature | 20.0 | 720 | < th | dose independent | sin | 17 | NA |
| 351 | 61.94 | temperature | 20.0 | 720 | < th | dose independent | rect. | 6 | 16 |
| 356 | 61.95 | temperature | 20.0 | 720 | < th | dose independent | rect. | 8 | 14 |
| 359 | 61.96 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 366 | 61.99 | temperature | 20.0 | 720 | > th | dose independent | sin | 20 | NA |
| 370 | 62.00 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 378 | 62.02 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 379 | 62.02 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 388 | 62.05 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 398 | 62.07 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 17 |
| 399 | 62.08 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 414 | 62.08 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 457 | 62.15 | temperature | 20.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 475 | 62.18 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 493 | 62.21 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 515 | 62.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 521 | 62.24 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 529 | 62.25 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 562 | 62.28 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 597 | 62.32 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 609 | 62.34 | wind | 3.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 622 | 62.35 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 624 | 62.35 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 19 | 8 |
| 644 | 62.39 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 683 | 62.44 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 696 | 62.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 702 | 62.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 747 | 62.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 748 | 62.54 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 754 | 62.54 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 755 | 62.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 765 | 62.55 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 803 | 62.58 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 843 | 62.59 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 854 | 62.61 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 860 | 62.61 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 23 |
| 878 | 62.62 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 914 | 62.66 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 23 |
| 918 | 62.67 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 2 |
| 927 | 62.67 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 23 |
| 937 | 62.69 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 945 | 62.70 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 23 |
| 969 | 62.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 977 | 62.72 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 984 | 62.73 | temperature | 20.0 | 4320 | > th | dose independent | sin | 18 | NA |
| 994 | 62.74 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |