BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0688600 Os01g0688600|AK072744
         (207 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60410.1  | chr3:22331612-22332680 FORWARD LENGTH=325           53   1e-07
AT1G48770.1  | chr1:18040285-18040916 FORWARD LENGTH=180           52   2e-07
AT1G25370.1  | chr1:8898046-8898934 REVERSE LENGTH=264             49   2e-06

>AT3G60410.1 | chr3:22331612-22332680 FORWARD LENGTH=325
          Length = 324

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 145 KKRVFSIVLSKEEIGQDFKAIRGTXXXXXXXXXXXTVQRQLDLLYPGLCLADLTPETYKI 204
           KK   SI LSK EI +D  A+ G+            VQ+QLD+L+PGL + +++ E YK+
Sbjct: 261 KKPRLSISLSKLEIDEDIYALTGSKPSRRPKKRAKNVQKQLDVLFPGLWMGNVSSEAYKV 320

Query: 205 EE 206
            E
Sbjct: 321 SE 322



>AT1G48770.1 | chr1:18040285-18040916 FORWARD LENGTH=180
          Length = 179

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 61/173 (35%), Gaps = 21/173 (12%)

Query: 45  RLHSFSFPTLSWGTHRLLRCSKNXXXXXXXXXXXXXXXXKEKAAHRSTDGVGGGCSPQR- 103
           RLH+FS P L WG  R LRC                      A +RS    G   +    
Sbjct: 10  RLHNFSLPQLRWGQQRFLRC------VNLPSPPPSSSSPDHAATNRSVSIAGVSLTRGGG 63

Query: 104 ---------GPQRPWNLXXXXXXXXXXXXE---GSXXXXXXXXXXXXXXXXXTKKRVFSI 151
                       +PWNL            E   G                   +K  FSI
Sbjct: 64  GGAKNGEVVAAAKPWNLRMRRAACSEPGEEIEIGVNKRRSIIDNEDGGGDKKNEKSKFSI 123

Query: 152 VLSKEEIGQDFKAIRGTXXXXXXXXXXXTVQRQLDLLYPGLCL--ADLTPETY 202
            LS++EI QDF  + G             VQ++L+ ++PGL L   ++T ++Y
Sbjct: 124 ALSRDEIEQDFSFVFGKKPPKRPKKRPRLVQKKLNTIFPGLWLNEEEVTIDSY 176



>AT1G25370.1 | chr1:8898046-8898934 REVERSE LENGTH=264
          Length = 263

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 145 KKRVFSIVLSKEEIGQDFKAIRGTXXXXXXXXXXXTVQRQLDLLYPGLCLADLTPETYKI 204
           K+ +FS+ LSK+E+ +DF  + G            TVQ++LD L+PGL L ++T + YK+
Sbjct: 202 KRPMFSMKLSKKEMEEDFIGMVGHRAPRRPKKRSKTVQKKLDSLFPGLYLTEVTHDAYKV 261

Query: 205 EE 206
            E
Sbjct: 262 PE 263



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,730,482
Number of extensions: 55338
Number of successful extensions: 57
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 113
Effective length of database: 8,529,465
Effective search space: 963829545
Effective search space used: 963829545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)