BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0550000 Os05g0550000|J033125M01
         (61 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0550000  Conserved hypothetical protein                      128   1e-30
Os01g0692700  Zinc finger, RING-type domain containing protein     65   1e-11

>Os05g0550000 Conserved hypothetical protein
          Length = 61

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  ELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPKHFATEVERNCSICQVSAPSNSLLT 60
          ELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPKHFATEVERNCSICQVSAPSNSLLT
Sbjct: 1  ELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPKHFATEVERNCSICQVSAPSNSLLT 60

Query: 61 I 61
          I
Sbjct: 61 I 61



>Os01g0692700 Zinc finger, RING-type domain containing protein
          Length = 201

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%), Gaps = 1/57 (1%)

Query: 1   ELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPK-HFATEVERNCSICQVSAPSN 56
           ELL+L D+IGYV+TGL +DEI R+LR VK+ AF+    ++TE+E+ CSICQ    +N
Sbjct: 108 ELLELGDKIGYVNTGLREDEIVRNLRKVKHPAFDSSFRYSTEMEKKCSICQEEFEAN 164



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,952,025
Number of extensions: 54194
Number of successful extensions: 105
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 61
Length of database: 17,035,801
Length adjustment: 33
Effective length of query: 28
Effective length of database: 15,312,739
Effective search space: 428756692
Effective search space used: 428756692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)