BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0545900 Os05g0545900|Os05g0545900
         (338 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0545900  Conserved hypothetical protein                      643   0.0  
Os05g0546800  Conserved hypothetical protein                      530   e-151

>Os05g0545900 Conserved hypothetical protein
          Length = 338

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/338 (91%), Positives = 309/338 (91%)

Query: 1   MRRPTIEEKLATYSMFQVRQGSTVPITAREWLDXXXXXXXXXXXXXXXXXXTFLPXXXXX 60
           MRRPTIEEKLATYSMFQVRQGSTVPITAREWLD                  TFLP     
Sbjct: 1   MRRPTIEEKLATYSMFQVRQGSTVPITAREWLDSLPPPPPPSPSQSGANSSTFLPAAAGS 60

Query: 61  XXXXXXRKKRTPGRWRRIPRTLPHPCLRKRPMTWEELLADSLDMSDKAHCFREEDKPAFR 120
                 RKKRTPGRWRRIPRTLPHPCLRKRPMTWEELLADSLDMSDKAHCFREEDKPAFR
Sbjct: 61  ACEAPARKKRTPGRWRRIPRTLPHPCLRKRPMTWEELLADSLDMSDKAHCFREEDKPAFR 120

Query: 121 ESKAQMARFYQRMIDIEKNKIEQIFRPRVLSDTPEQHLTAEEMEAELAGKKVCPQAHRFA 180
           ESKAQMARFYQRMIDIEKNKIEQIFRPRVLSDTPEQHLTAEEMEAELAGKKVCPQAHRFA
Sbjct: 121 ESKAQMARFYQRMIDIEKNKIEQIFRPRVLSDTPEQHLTAEEMEAELAGKKVCPQAHRFA 180

Query: 181 NLAINHYNNIEKNIVKIELCTVLLSNCFHEVCGSTYAHVNFTARAQNDDQAKKSLYFAEL 240
           NLAINHYNNIEKNIVKIELCTVLLSNCFHEVCGSTYAHVNFTARAQNDDQAKKSLYFAEL
Sbjct: 181 NLAINHYNNIEKNIVKIELCTVLLSNCFHEVCGSTYAHVNFTARAQNDDQAKKSLYFAEL 240

Query: 241 KLNPDLLAKRMERFAELSLDPNIVGCADDIEPMCVVSIHNLQGSCFGGCHEINRRIDYVM 300
           KLNPDLLAKRMERFAELSLDPNIVGCADDIEPMCVVSIHNLQGSCFGGCHEINRRIDYVM
Sbjct: 241 KLNPDLLAKRMERFAELSLDPNIVGCADDIEPMCVVSIHNLQGSCFGGCHEINRRIDYVM 300

Query: 301 TRNQDYERCHSCSDRIKHPYGTEFVAGHDSSKIPERIF 338
           TRNQDYERCHSCSDRIKHPYGTEFVAGHDSSKIPERIF
Sbjct: 301 TRNQDYERCHSCSDRIKHPYGTEFVAGHDSSKIPERIF 338



>Os05g0546800 Conserved hypothetical protein
          Length = 439

 Score =  530 bits (1365), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 245/268 (91%), Positives = 255/268 (95%)

Query: 67  RKKRTPGRWRRIPRTLPHPCLRKRPMTWEELLADSLDMSDKAHCFREEDKPAFRESKAQM 126
           R+KRTPGRWRRIPRTLPHPCLRKRPMTWEELLADSLDMSD+ HCFREEDKPAFR+SKAQM
Sbjct: 167 RRKRTPGRWRRIPRTLPHPCLRKRPMTWEELLADSLDMSDEVHCFREEDKPAFRKSKAQM 226

Query: 127 ARFYQRMIDIEKNKIEQIFRPRVLSDTPEQHLTAEEMEAELAGKKVCPQAHRFANLAINH 186
           ARFYQRMIDIE NKI+QIFRPRV SDT EQHLTAEEMEAE AGKKV  QA  FANLAINH
Sbjct: 227 ARFYQRMIDIENNKIKQIFRPRVPSDTHEQHLTAEEMEAEFAGKKVSSQACHFANLAINH 286

Query: 187 YNNIEKNIVKIELCTVLLSNCFHEVCGSTYAHVNFTARAQNDDQAKKSLYFAELKLNPDL 246
           YNNIE+NIVKIELCTVLLSNCFHE+CGSTYAHVNFTARA++DDQAKK LYFAELKLNPDL
Sbjct: 287 YNNIEENIVKIELCTVLLSNCFHEICGSTYAHVNFTARAEDDDQAKKRLYFAELKLNPDL 346

Query: 247 LAKRMERFAELSLDPNIVGCADDIEPMCVVSIHNLQGSCFGGCHEINRRIDYVMTRNQDY 306
           LAKR ERF ELSLDPNIVGCADDIEPMCVVSIHNLQGSCFGGCHEINRRIDYVM RNQDY
Sbjct: 347 LAKRRERFVELSLDPNIVGCADDIEPMCVVSIHNLQGSCFGGCHEINRRIDYVMIRNQDY 406

Query: 307 ERCHSCSDRIKHPYGTEFVAGHDSSKIP 334
           ERCH+CSDRIKHPYGTEF+AGHDSSKIP
Sbjct: 407 ERCHACSDRIKHPYGTEFIAGHDSSKIP 434




 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MRRPTIEEKLATYSMFQVRQGSTVPITAREWLD 33
          MRRPTIEEKLATYSMFQVRQGSTVPITAREWLD
Sbjct: 1  MRRPTIEEKLATYSMFQVRQGSTVPITAREWLD 33



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,676,842
Number of extensions: 406255
Number of successful extensions: 859
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 237
Effective length of database: 11,762,187
Effective search space: 2787638319
Effective search space used: 2787638319
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)