FiT-DB / Search/ Help/ Sample detail

Os05g0546800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.014) R2 : 0.737
β1 : 1.73 (0.0514) R2dD : 0.675 R2D : 0.475
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.553 (0.03) R2dN8 : 0.263 R2N8 : 0.0625
σ : 0.264
deviance : 31.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.74 0.18 12.5 1.6 0.473 -0.0803 -0.302 -1.64 0.565 21.3 0.8422 4680 -- --
16.07 0.187 12.5 1.68 0.476 -0.278 -0.232 -- 0.634 21.5 2.023 29794 -- --
15.06 0.181 12.5 1.61 0.476 -0.082 -- -1.62 0.567 21.3 0.8714 4527 -- --
16.33 0.188 12.5 1.68 0.48 -0.275 -- -- 0.637 21.4 3 29554 -- --
28.21 0.247 12.5 1.59 -- -0.0913 -- -1.69 0.557 -- 0.8364 4742 -- --
18.12 0.2 12.5 1.71 0.477 -- -0.295 -- 0.555 21.4 -- -- -- --
18.43 0.201 12.5 1.73 0.478 -- -- -- 0.555 21.4 -- -- -- --
29.87 0.255 12.5 1.7 -- -0.257 -- -- 0.628 -- 3.579 29631 -- --
85.93 0.432 12.5 -- 0.455 -0.601 -- -- 0.559 21.1 6.466 22697 -- --
31.81 0.264 12.5 1.73 -- -- -- -- 0.553 -- -- -- -- --
96.94 0.461 12.5 -- 0.48 -- -- -- 0.363 21.6 -- -- -- --
86.87 0.434 12.5 -- -- -1.21 -- -- 0.472 -- 4.64 2220 -- --
110.61 0.491 12.5 -- -- -- -- -- 0.362 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.90 wind 1.0 43200 < th dose independent rect. 1 8
3 12.91 wind 1.0 43200 > th dose independent rect. 1 8
5 12.93 wind 1.0 43200 < th dose independent rect. 3 6
11 13.05 wind 1.0 43200 < th dose dependent rect. 1 7
12 13.06 wind 1.0 43200 > th dose independent rect. 3 6
18 13.11 wind 1.0 43200 < th dose dependent rect. 3 4
39 13.25 wind 3.0 43200 < th dose dependent rect. 4 2
61 13.42 wind 1.0 43200 < th dose dependent rect. 2 11
62 13.43 wind 1.0 43200 < th dose independent rect. 5 2
74 13.57 wind 1.0 43200 > th dose independent rect. 5 1
120 13.89 wind 1.0 43200 > th dose dependent rect. 5 1
121 13.89 wind 5.0 43200 < th dose dependent rect. 7 1
160 14.05 precipitation 0.1 4320 > th dose dependent rect. 22 19
191 14.15 wind 1.0 43200 > th dose dependent rect. 7 1
200 14.18 precipitation 0.1 14400 < th dose independent rect. 12 4
202 14.18 precipitation 0.1 14400 < th dose dependent rect. 12 4
204 14.19 precipitation 0.1 14400 > th dose dependent rect. 12 4
209 14.22 precipitation 0.1 14400 > th dose independent rect. 12 4
210 14.22 wind 1.0 43200 > th dose dependent rect. 5 3
222 14.25 precipitation 0.1 4320 < th dose independent rect. 22 19
223 14.25 wind 3.0 14400 < th dose dependent rect. 2 1
225 14.25 precipitation 0.1 14400 > th dose dependent rect. 9 7
227 14.25 precipitation 0.1 4320 < th dose dependent rect. 22 19
229 14.26 precipitation 0.1 4320 > th dose independent rect. 22 19
256 14.30 precipitation 0.1 4320 > th dose dependent rect. 19 22
257 14.31 wind 3.0 43200 < th dose independent rect. 7 1
258 14.31 humidity 80.0 43200 > th dose independent rect. 6 1
259 14.31 humidity 80.0 43200 < th dose independent rect. 6 1
261 14.31 precipitation 0.1 14400 > th dose dependent rect. 7 10
262 14.32 wind 1.0 43200 < th dose independent sin 7 NA
282 14.35 precipitation 0.1 14400 < th dose independent rect. 9 8
286 14.35 precipitation 0.1 14400 < th dose dependent rect. 9 8
288 14.35 precipitation 0.1 4320 > th dose dependent rect. 23 15
289 14.36 wind 1.0 43200 > th dose independent sin 7 NA
292 14.36 precipitation 0.1 14400 > th dose independent rect. 9 8
329 14.39 precipitation 0.1 4320 > th dose dependent rect. 1 13
370 14.43 precipitation 0.1 14400 > th dose dependent rect. 13 1
400 14.46 precipitation 0.1 4320 > th dose dependent rect. 19 19
405 14.48 wind 3.0 43200 > th dose independent rect. 7 1
451 14.53 precipitation 0.1 4320 > th dose dependent sin 4 NA
454 14.53 precipitation 0.1 43200 > th dose dependent rect. 18 2
481 14.55 precipitation 0.1 4320 < th dose independent rect. 19 22
494 14.55 precipitation 0.1 4320 < th dose dependent rect. 19 22
498 14.56 precipitation 0.1 4320 > th dose independent rect. 19 22
507 14.56 precipitation 0.1 4320 > th dose dependent rect. 19 15
514 14.57 precipitation 0.1 4320 > th dose dependent rect. 19 13
516 14.58 precipitation 0.1 14400 < th dose independent rect. 13 1
519 14.58 precipitation 0.1 14400 < th dose dependent rect. 13 1
547 14.60 precipitation 0.1 43200 > th dose dependent rect. 16 4
552 14.60 wind 1.0 43200 > th dose dependent rect. 23 9
571 14.63 humidity 80.0 43200 < th dose independent rect. 5 3
573 14.63 wind 1.0 43200 < th dose dependent sin 5 NA
606 14.65 wind 9.0 14400 > th dose dependent rect. 10 1
630 14.66 precipitation 0.1 4320 > th dose independent rect. 22 22
639 14.67 precipitation 0.1 4320 < th dose independent sin 4 NA
642 14.67 precipitation 0.1 4320 < th dose independent rect. 22 22
644 14.67 precipitation 0.1 4320 < th dose dependent sin 4 NA
652 14.67 precipitation 0.1 4320 < th dose dependent rect. 22 22
653 14.68 precipitation 0.1 4320 > th dose independent sin 3 NA
668 14.68 precipitation 0.1 4320 < th dose independent rect. 23 15
683 14.68 precipitation 0.1 4320 < th dose dependent rect. 23 15
688 14.69 precipitation 0.1 14400 > th dose independent rect. 4 16
689 14.69 precipitation 0.1 14400 < th dose independent rect. 4 16
691 14.69 wind 5.0 43200 < th dose dependent sin 8 NA
693 14.69 humidity 70.0 1440 > th dose dependent rect. 11 1
702 14.69 precipitation 0.1 14400 < th dose dependent rect. 4 16
708 14.70 precipitation 0.1 14400 > th dose independent rect. 7 13
709 14.70 precipitation 0.1 4320 > th dose independent rect. 23 15
722 14.71 humidity 70.0 1440 > th dose independent rect. 11 2
726 14.71 wind 1.0 43200 < th dose independent rect. 19 11
727 14.71 precipitation 0.1 14400 > th dose independent rect. 9 11
728 14.71 precipitation 0.1 14400 < th dose independent rect. 9 11
730 14.71 precipitation 0.1 14400 < th dose independent rect. 7 13
740 14.71 precipitation 0.1 14400 < th dose dependent rect. 9 11
743 14.71 precipitation 0.1 14400 < th dose dependent rect. 7 13
745 14.72 precipitation 0.1 14400 > th dose independent sin 0 NA
748 14.72 precipitation 0.1 14400 > th dose independent rect. 12 8
749 14.72 precipitation 0.1 14400 < th dose independent rect. 12 8
760 14.72 precipitation 0.1 14400 < th dose dependent rect. 12 8
765 14.73 precipitation 0.1 14400 < th dose independent sin 0 NA
766 14.73 precipitation 0.1 14400 < th dose independent rect. 17 1
773 14.73 precipitation 0.1 4320 > th dose independent rect. 1 13
780 14.73 precipitation 0.1 14400 < th dose dependent sin 0 NA
781 14.73 precipitation 0.1 14400 < th dose dependent rect. 17 1
793 14.74 precipitation 0.1 14400 > th dose independent rect. 17 1
811 14.75 precipitation 0.1 14400 > th dose independent rect. 19 1
812 14.75 precipitation 0.1 14400 < th dose independent rect. 19 1
826 14.75 precipitation 0.1 14400 < th dose dependent rect. 19 1
863 14.77 precipitation 0.1 4320 < th dose independent rect. 3 11
873 14.77 precipitation 0.1 4320 < th dose dependent rect. 3 11
882 14.78 precipitation 0.1 4320 > th dose independent rect. 3 11
933 14.81 precipitation 0.1 4320 < th dose independent rect. 13 19
934 14.81 precipitation 0.1 4320 > th dose independent rect. 12 20
949 14.81 precipitation 0.1 4320 < th dose dependent rect. 13 19