BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0534600 Os05g0534600|AK068203
(709 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0534600 Conserved hypothetical protein 1167 0.0
Os01g0719400 Conserved hypothetical protein 124 2e-28
Os01g0595100 Conserved hypothetical protein 86 9e-17
>Os05g0534600 Conserved hypothetical protein
Length = 709
Score = 1167 bits (3020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/689 (85%), Positives = 587/689 (85%)
Query: 21 APLPAVRRRDAASDNYXXXXXXXXXGARPSPPTKAGSDAESDGQXXXXXXXXXXXXXXXX 80
APLPAVRRRDAASDNY GARPSPPTKAGSDAESDGQ
Sbjct: 21 APLPAVRRRDAASDNYEEEEEEEEEGARPSPPTKAGSDAESDGQGAAEVYDDDDAYEDDE 80
Query: 81 XXXXXXXXXXXFEQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 140
FEQGR
Sbjct: 81 GYEEYGEVYEEFEQGRGVAGGVATGAVAAAGEEAGMGMKGEAEGEASAAAAEGEEGKKGS 140
Query: 141 XPYAVPTAGAFYMHDDRFQEARGHGRQRRMVGDRRLWNAKEDQAWVHDRFDEMNLHDFHN 200
PYAVPTAGAFYMHDDRFQEARGHGRQRRMVGDRRLWNAKEDQAWVHDRFDEMNLHDFHN
Sbjct: 141 EPYAVPTAGAFYMHDDRFQEARGHGRQRRMVGDRRLWNAKEDQAWVHDRFDEMNLHDFHN 200
Query: 201 DYTXXXXXXXXXXXXXAPVGKVRGGSRDNFRGNRSQTYYRDGAKNYIYVPKEPHSYHDNT 260
DYT APVGKVRGGSRDNFRGNRSQTYYRDGAKNYIYVPKEPHSYHDNT
Sbjct: 201 DYTRRRPRGRFRGRGGAPVGKVRGGSRDNFRGNRSQTYYRDGAKNYIYVPKEPHSYHDNT 260
Query: 261 KKVQQVLNDNGKNRTIKPPNPRDGDANNFDFVRKESRPLYGNAKSNKSAPRVVRGRGSKR 320
KKVQQVLNDNGKNRTIKPPNPRDGDANNFDFVRKESRPLYGNAKSNKSAPRVVRGRGSKR
Sbjct: 261 KKVQQVLNDNGKNRTIKPPNPRDGDANNFDFVRKESRPLYGNAKSNKSAPRVVRGRGSKR 320
Query: 321 YQPHWRSTAEISSEHNNKSQNLENTSSNANLGKHQHQASNSQPERGFPMKQSFASNLNSA 380
YQPHWRSTAEISSEHNNKSQNLENTSSNANLGKHQHQASNSQPERGFPMKQSFASNLNSA
Sbjct: 321 YQPHWRSTAEISSEHNNKSQNLENTSSNANLGKHQHQASNSQPERGFPMKQSFASNLNSA 380
Query: 381 SPPFYPSRPSHQELPVSQRGDGQPSTTTRHFSSPIGMEHVSPTPQYGPLLRGKAFVPSAG 440
SPPFYPSRPSHQELPVSQRGDGQPSTTTRHFSSPIGMEHVSPTPQYGPLLRGKAFVPSAG
Sbjct: 381 SPPFYPSRPSHQELPVSQRGDGQPSTTTRHFSSPIGMEHVSPTPQYGPLLRGKAFVPSAG 440
Query: 441 HGKLHAEVPIKGMDHPSFHXXXXXXXXQFPIATNQVTGNSAKSPHPIVQQRLVQSFNQST 500
HGKLHAEVPIKGMDHPSFH QFPIATNQVTGNSAKSPHPIVQQRLVQSFNQST
Sbjct: 441 HGKLHAEVPIKGMDHPSFHSSTSSSTSQFPIATNQVTGNSAKSPHPIVQQRLVQSFNQST 500
Query: 501 PKMPGQMFAAQFASSDKLPSSMQSTSTILTEGTEISSPHGSNKSNTRLMAKGQHSDQGEE 560
PKMPGQMFAAQFASSDKLPSSMQSTSTILTEGTEISSPHGSNKSNTRLMAKGQHSDQGEE
Sbjct: 501 PKMPGQMFAAQFASSDKLPSSMQSTSTILTEGTEISSPHGSNKSNTRLMAKGQHSDQGEE 560
Query: 561 HASFMYGGAQVLGTTGSLGDQNFHGTPALFPVMQFGGQHPGGTGVPSIGMALPGFVSQQQ 620
HASFMYGGAQVLGTTGSLGDQNFHGTPALFPVMQFGGQHPGGTGVPSIGMALPGFVSQQQ
Sbjct: 561 HASFMYGGAQVLGTTGSLGDQNFHGTPALFPVMQFGGQHPGGTGVPSIGMALPGFVSQQQ 620
Query: 621 LGLSNSEMTWLPILAGASGALGATYGSPYITVDGSYYPRTSEHASSSVSLREPSASSQLK 680
LGLSNSEMTWLPILAGASGALGATYGSPYITVDGSYYPRTSEHASSSVSLREPSASSQLK
Sbjct: 621 LGLSNSEMTWLPILAGASGALGATYGSPYITVDGSYYPRTSEHASSSVSLREPSASSQLK 680
Query: 681 SQEITEALNDELSQRQHKPRRYSEMNFGK 709
SQEITEALNDELSQRQHKPRRYSEMNFGK
Sbjct: 681 SQEITEALNDELSQRQHKPRRYSEMNFGK 709
>Os01g0719400 Conserved hypothetical protein
Length = 404
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 111/230 (48%), Gaps = 23/230 (10%)
Query: 144 AVPTAGAFYMHDDRFQEARG--HGRQRRMVGDRRLWNAKEDQAWVHDRFDEMNLHDFHND 201
AVPT GAFYMHDDRF++ HG QR+ G ++LW K+D W HDRF EMN H H+
Sbjct: 168 AVPTIGAFYMHDDRFRDPENGRHGSQRKNFGGQKLWYPKDDNVWAHDRFYEMNSH--HDR 225
Query: 202 YTXXXXXXXXXXXXXAPVGKVR--GGSRDN------FRGNRSQTYYRDGAKNYIYVPKEP 253
P G R GG R + SQ+YY D + Y YVPKEP
Sbjct: 226 LYETNSHNSPNDSGRGPRGSFRAWGGDRTHRYDHGYLERTLSQSYYHDDREEYKYVPKEP 285
Query: 254 HSYHDNTKKVQQVLNDNGK-----NRTIKPPNP-----RDGDANNFDFVRKESRPLYGNA 303
++ T+ L ++ N + P+ GD NF +V++ES YGNA
Sbjct: 286 RTFFATTRDHISFLKESNNMYGSANNYKRVPSKFHTYYDHGDTKNFAYVQRESHTYYGNA 345
Query: 304 KSNKSAPRVVRGRGSKRYQPHWRSTAEISSEHNNKSQNLENTSSNANLGK 353
K SA RG S Y HWRS EI S +SQN E SSNA GK
Sbjct: 346 KDFTSAHDGYRGGVSNPYVSHWRSDPEICSGQYIRSQN-EEASSNAEGGK 394
>Os01g0595100 Conserved hypothetical protein
Length = 230
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 49/58 (84%)
Query: 142 PYAVPTAGAFYMHDDRFQEARGHGRQRRMVGDRRLWNAKEDQAWVHDRFDEMNLHDFH 199
P+AVPT+GAFYMHDDRFQE R RRM G R+LW+AK+DQAWVHDRF+EMNLH+ H
Sbjct: 165 PFAVPTSGAFYMHDDRFQEESRGRRSRRMFGGRKLWDAKDDQAWVHDRFEEMNLHEEH 222
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,337,187
Number of extensions: 1064080
Number of successful extensions: 2300
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2294
Number of HSP's successfully gapped: 4
Length of query: 709
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 601
Effective length of database: 11,396,689
Effective search space: 6849410089
Effective search space used: 6849410089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)