BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0529400 Os05g0529400|AK063846
         (113 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0529400  Conserved hypothetical protein                      183   2e-47
Os01g0731000  Conserved hypothetical protein                      166   5e-42
Os09g0345000  Conserved hypothetical protein                      140   2e-34

>Os05g0529400 Conserved hypothetical protein
          Length = 113

 Score =  183 bits (465), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 90/113 (79%)

Query: 1   MGCAGSTPKVDENSXXXXXXXXXXHTQAITPTQLSKMREEFWDTAPHYGGQKEIWDXXXX 60
           MGCAGSTPKVDENS          HTQAITPTQLSKMREEFWDTAPHYGGQKEIWD    
Sbjct: 1   MGCAGSTPKVDENSKKLKKPKPWKHTQAITPTQLSKMREEFWDTAPHYGGQKEIWDALRA 60

Query: 61  XXXXXXXXXQTIVNSAGIVVSNSDMTLCYDERGAKYELPKYVLSEPTNLIREP 113
                    QTIVNSAGIVVSNSDMTLCYDERGAKYELPKYVLSEPTNLIREP
Sbjct: 61  AAEAELPLAQTIVNSAGIVVSNSDMTLCYDERGAKYELPKYVLSEPTNLIREP 113



>Os01g0731000 Conserved hypothetical protein
          Length = 113

 Score =  166 bits (419), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 85/112 (75%)

Query: 1   MGCAGSTPKVDENSXXXXXXXXXXHTQAITPTQLSKMREEFWDTAPHYGGQKEIWDXXXX 60
           MGCAGSTPK D+NS          H QAIT TQL +MR+EFWDTAPHYGGQKEIWD    
Sbjct: 1   MGCAGSTPKTDDNSKKLKKPKPWKHNQAITTTQLKQMRDEFWDTAPHYGGQKEIWDALRA 60

Query: 61  XXXXXXXXXQTIVNSAGIVVSNSDMTLCYDERGAKYELPKYVLSEPTNLIRE 112
                    QTIV+SAGI+VSNSDMT+CYDERGAKYELPKYVLSEPTNLIRE
Sbjct: 61  AAEAELSLAQTIVDSAGIIVSNSDMTICYDERGAKYELPKYVLSEPTNLIRE 112



>Os09g0345000 Conserved hypothetical protein
          Length = 116

 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 77/115 (66%), Gaps = 3/115 (2%)

Query: 1   MGCAGSTPKVDENSXXXXXXXXXX---HTQAITPTQLSKMREEFWDTAPHYGGQKEIWDX 57
           MGCAGSTP     S             H Q IT  QL+KMREEFWDTAPHYGG+KEIWD 
Sbjct: 1   MGCAGSTPMGAPESDATKKIRKPKPWKHPQPITMVQLTKMREEFWDTAPHYGGRKEIWDA 60

Query: 58  XXXXXXXXXXXXQTIVNSAGIVVSNSDMTLCYDERGAKYELPKYVLSEPTNLIRE 112
                       Q IV SA I+VSN+D+TLCYDERGAKYELPKYVLSEPTNLI++
Sbjct: 61  LRVAAESEVSLAQAIVESAAIIVSNTDLTLCYDERGAKYELPKYVLSEPTNLIQD 115



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,143,801
Number of extensions: 79918
Number of successful extensions: 58
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 3
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)