BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0520100 Os05g0520100|Os05g0520100
         (353 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0520100  MPPN family protein                                 457   e-129
Os01g0200500  MPPN family protein                                 132   4e-31

>Os05g0520100 MPPN family protein
          Length = 353

 Score =  457 bits (1177), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/331 (72%), Positives = 241/331 (72%)

Query: 23  PFFRDLASPIPXXXXXXXXXXXXXXXXXXXXXXXXXLFTLDDRXXXXXXXXXXXXXXXXX 82
           PFFRDLASPIP                         LFTLDDR                 
Sbjct: 23  PFFRDLASPIPSHRAASRFASSAAGPTAATTPPPPPLFTLDDRAAAVDFSPDAAASELLL 82

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXXXGRASAPGSPMDGVVEPPRKEVLXXXXXXXXXXXXX 142
                                    GRASAPGSPMDGVVEPPRKEVL             
Sbjct: 83  PVASSPSPRSAAAAASRSPSWDRSRGRASAPGSPMDGVVEPPRKEVLALPPPPSPGTPAP 142

Query: 143 XXXXXXXXXXVTPAPVSTGMEQEMNGGGEVDREEWITVFGFSLKDTNLVIREFEKCGVIL 202
                     VTPAPVSTGMEQEMNGGGEVDREEWITVFGFSLKDTNLVIREFEKCGVIL
Sbjct: 143 PPPAAEAQSPVTPAPVSTGMEQEMNGGGEVDREEWITVFGFSLKDTNLVIREFEKCGVIL 202

Query: 203 RHHSGPRDEFHIVDMTKLTIFSPGLGLILTIMFVYLALKHSYDARKALQKNGVQLSSGVI 262
           RHHSGPRDEFHIVDMTKLTIFSPGLGLILTIMFVYLALKHSYDARKALQKNGVQLSSGVI
Sbjct: 203 RHHSGPRDEFHIVDMTKLTIFSPGLGLILTIMFVYLALKHSYDARKALQKNGVQLSSGVI 262

Query: 263 IGVKPIDPMHRQQLDERFAGNKQGGFMVSLPPKSLVLKGTGASNQLGALPRPYDPKANTN 322
           IGVKPIDPMHRQQLDERFAGNKQGGFMVSLPPKSLVLKGTGASNQLGALPRPYDPKANTN
Sbjct: 263 IGVKPIDPMHRQQLDERFAGNKQGGFMVSLPPKSLVLKGTGASNQLGALPRPYDPKANTN 322

Query: 323 VIRDANRRATGSVAAPAKSLVTNVMDLIFGI 353
           VIRDANRRATGSVAAPAKSLVTNVMDLIFGI
Sbjct: 323 VIRDANRRATGSVAAPAKSLVTNVMDLIFGI 353



>Os01g0200500 MPPN family protein
          Length = 327

 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 120/245 (48%), Gaps = 38/245 (15%)

Query: 114 GSPMDGVVEPPRKEVLXXXXXXXXXXXXXXXXXXXXXXXVTPAPVSTGMEQEMN-----G 168
           GSP+DGVV+P ++                          +T  P       EM       
Sbjct: 116 GSPVDGVVQPQQQP--------SPTTASGQQSQQQKVTLITLPPPREVARPEMPKDSTPS 167

Query: 169 GGEVDREEWITVFGFSLKDTNLVIREFEKCGVILRHHSGPRDEFHIVDMTKLTIFSPGLG 228
            G VD EEW+TVFGF   DTNLV+REFEKCG++LRH  GPRD                  
Sbjct: 168 AGRVDEEEWVTVFGFLPGDTNLVLREFEKCGIVLRHVPGPRD------------------ 209

Query: 229 LILTIMFVYLALKHSYDARKALQKNGVQLSSGVIIGVKPIDPMHRQQLDERFAGNKQGGF 288
                 ++++  +  +DA+KAL K+G QL+S +IIGVK +DP  RQ L+E+   N Q G 
Sbjct: 210 ----ANWMHILYQSRHDAQKALTKHGQQLNSVLIIGVKQVDPWQRQYLNEKTNENFQVGA 265

Query: 289 MVSLPPKSLVLKGTGASNQLGALPRPYDPKANTNVIRDANRRATGSVAAPAKSLVTNVMD 348
               P + +        N L  LP    P    N    + R A+G++A+P KS+++ VMD
Sbjct: 266 TDPFPSQHVAPSSFTTRNALAPLPSNSMPNGIGN---GSGRGASGAIASPTKSVLSKVMD 322

Query: 349 LIFGI 353
           L+FG+
Sbjct: 323 LMFGL 327



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,017,514
Number of extensions: 340695
Number of successful extensions: 626
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 2
Length of query: 353
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 251
Effective length of database: 11,709,973
Effective search space: 2939203223
Effective search space used: 2939203223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)