Os05g0520100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MPPN family protein.
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Os05g0520100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MPPN family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.46 | 0.284 | 9.03 | 0.846 | 0.651 | -0.942 | 0.174 | 0.485 | 0.0541 | 16.7 | 79 | 1323 | -- | -- |
| 36.62 | 0.282 | 9.03 | 0.825 | 0.661 | -0.877 | 0.0702 | -- | 0.0443 | 16.6 | 78 | 1325 | -- | -- |
| 36.53 | 0.282 | 9.03 | 0.845 | 0.652 | -0.943 | -- | 0.449 | 0.0545 | 16.6 | 78.88 | 1325 | -- | -- |
| 36.64 | 0.282 | 9.03 | 0.825 | 0.651 | -0.892 | -- | -- | 0.0478 | 16.6 | 77.93 | 1325 | -- | -- |
| 57.49 | 0.353 | 9.02 | 0.819 | -- | -1.14 | -- | 0.441 | 0.0501 | -- | 79 | 1262 | -- | -- |
| 47.18 | 0.322 | 9.04 | 0.76 | 0.725 | -- | 0.213 | -- | 0.00144 | 16.5 | -- | -- | -- | -- |
| 47.3 | 0.322 | 9.04 | 0.762 | 0.726 | -- | -- | -- | 0.00259 | 16.4 | -- | -- | -- | -- |
| 57.49 | 0.353 | 9.02 | 0.839 | -- | -1.12 | -- | -- | 0.0718 | -- | 76.15 | 1262 | -- | -- |
| 53.52 | 0.341 | 9.05 | -- | 0.65 | -0.848 | -- | -- | -0.0349 | 16.6 | 79.52 | 1345 | -- | -- |
| 75.54 | 0.406 | 9.03 | 0.733 | -- | -- | -- | -- | -0.0166 | -- | -- | -- | -- | -- |
| 62.59 | 0.37 | 9.06 | -- | 0.712 | -- | -- | -- | -0.0822 | 16.4 | -- | -- | -- | -- |
| 73 | 0.398 | 9.04 | -- | -- | -1.05 | -- | -- | -0.0316 | -- | 82.08 | 1279 | -- | -- |
| 89.72 | 0.442 | 9.05 | -- | -- | -- | -- | -- | -0.0979 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.75 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 4 | 36.92 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 7 | 37.11 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 8 | 37.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 10 | 37.14 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 16 | 37.16 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 22 | 37.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 26 | 37.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 20 |
| 27 | 37.20 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 37 | 37.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 39 | 37.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 41 | 37.24 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 50 | 37.27 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 55 | 37.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 58 | 37.29 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 59 | 37.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 91 | 37.33 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 125 | 37.37 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 133 | 37.38 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 145 | 37.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 167 | 37.42 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 170 | 37.43 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 171 | 37.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 231 | 37.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 259 | 37.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 268 | 37.63 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 13 |
| 272 | 37.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 303 | 37.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 321 | 37.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 338 | 37.80 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 339 | 37.81 | humidity | 80 | 720 | > th | dose independent | sin | 16 | NA |
| 370 | 37.86 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 375 | 37.87 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 401 | 37.91 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 13 |
| 417 | 37.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 451 | 37.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 496 | 38.02 | humidity | 50 | 1440 | > th | dose dependent | sin | 17 | NA |
| 501 | 38.03 | humidity | 80 | 720 | < th | dose independent | sin | 17 | NA |
| 510 | 38.03 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 515 | 38.04 | humidity | 60 | 720 | > th | dose dependent | sin | 15 | NA |
| 516 | 38.04 | humidity | 70 | 1440 | > th | dose dependent | sin | 21 | NA |
| 576 | 38.10 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 577 | 38.11 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 589 | 38.11 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 653 | 38.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 680 | 38.19 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 18 |
| 704 | 38.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 718 | 38.23 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 4 |
| 737 | 38.24 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 760 | 38.24 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 903 | 38.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 908 | 38.35 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 961 | 38.39 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 8 |
| 980 | 38.40 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 10 |