Os01g0200500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MPPN family protein.
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Os01g0200500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MPPN family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.35 | 0.424 | 8.64 | 0.926 | 1.42 | 1.24 | 0.793 | 0.945 | 0.0207 | 15.9 | 20.4 | 1060 | -- | -- |
| 83.64 | 0.426 | 8.66 | 0.81 | 1.45 | 1.16 | 0.576 | -- | -0.0139 | 15.9 | 20.6 | 1065 | -- | -- |
| 83.11 | 0.425 | 8.64 | 0.901 | 1.43 | 1.24 | -- | 0.796 | 0.0155 | 15.9 | 20.41 | 1060 | -- | -- |
| 84.61 | 0.428 | 8.66 | 0.758 | 1.44 | 1.13 | -- | -- | -0.00196 | 15.9 | 20.58 | 1065 | -- | -- |
| 166.93 | 0.602 | 8.62 | 0.984 | -- | 1.39 | -- | 1.41 | 0.0371 | -- | 20 | 280 | -- | -- |
| 115.28 | 0.503 | 8.61 | 1.21 | 1.36 | -- | 0.91 | -- | 0.234 | 16.3 | -- | -- | -- | -- |
| 117.57 | 0.508 | 8.61 | 1.22 | 1.36 | -- | -- | -- | 0.239 | 16.3 | -- | -- | -- | -- |
| 130.8 | 0.533 | 8.64 | 0.908 | -- | 1.05 | -- | -- | -0.0349 | -- | 26.3 | 235 | -- | -- |
| 97.09 | 0.459 | 8.7 | -- | 1.42 | 1.44 | -- | -- | -0.148 | 16 | 20.52 | 1217 | -- | -- |
| 218.02 | 0.69 | 8.6 | 1.16 | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
| 156.54 | 0.585 | 8.64 | -- | 1.34 | -- | -- | -- | 0.104 | 16.3 | -- | -- | -- | -- |
| 150.62 | 0.572 | 8.69 | -- | -- | 1.1 | -- | -- | -0.228 | -- | 25.8 | 211 | -- | -- |
| 253.61 | 0.743 | 8.63 | -- | -- | -- | -- | -- | 0.0743 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.97 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 6 | 81.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 8 | 81.62 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 15 |
| 11 | 82.06 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 20 |
| 19 | 82.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 23 | 82.28 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 37 | 82.49 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 48 | 82.61 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 18 |
| 71 | 82.85 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 12 |
| 111 | 83.09 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 148 | 83.29 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 209 | 83.50 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 219 | 83.56 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 23 |
| 259 | 83.66 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 289 | 83.75 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 22 |
| 396 | 84.04 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 421 | 84.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 501 | 84.37 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 23 |
| 512 | 84.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 513 | 84.41 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 748 | 85.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 817 | 85.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 907 | 85.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |