BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0200500 Os01g0200500|AK068290
(327 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0200500 MPPN family protein 436 e-122
Os05g0520100 MPPN family protein 119 4e-27
>Os01g0200500 MPPN family protein
Length = 327
Score = 436 bits (1120), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/327 (70%), Positives = 229/327 (70%)
Query: 1 MSASRPDHRRHHPPFLRDLSSPISSAVRLPPASLRRETQGXXXXXXXXXXXXXXXXXXXX 60
MSASRPDHRRHHPPFLRDLSSPISSAVRLPPASLRRETQG
Sbjct: 1 MSASRPDHRRHHPPFLRDLSSPISSAVRLPPASLRRETQGSTTPPPPPPPLLFLDDLSHH 60
Query: 61 XXXPRXXXXXXXXXXXXXXXXXHRGGLFSSTPLRSNGXXXXXXXXXXXREEMAREXXXXX 120
PR HRGGLFSSTPLRSNG REEMARE
Sbjct: 61 SPSPRPATPPQAAAMSPSPPPPHRGGLFSSTPLRSNGSPSPAAWWSSSREEMAREGSPVD 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXLITLPPPREVARPEMPKDSTPSAGRVDEEEWVTVF 180
LITLPPPREVARPEMPKDSTPSAGRVDEEEWVTVF
Sbjct: 121 GVVQPQQQPSPTTASGQQSQQQKVTLITLPPPREVARPEMPKDSTPSAGRVDEEEWVTVF 180
Query: 181 GFLPGDTNLVLREFEKCGIVLRHVPGPRDANWMHILYQSRHDAQKALTKHGQQLNSVLII 240
GFLPGDTNLVLREFEKCGIVLRHVPGPRDANWMHILYQSRHDAQKALTKHGQQLNSVLII
Sbjct: 181 GFLPGDTNLVLREFEKCGIVLRHVPGPRDANWMHILYQSRHDAQKALTKHGQQLNSVLII 240
Query: 241 GVKQVDPWQRQYLNEKTNENFQVGATDPFPSQHVAPSSFTTRNALAPLPSNSMPXXXXXX 300
GVKQVDPWQRQYLNEKTNENFQVGATDPFPSQHVAPSSFTTRNALAPLPSNSMP
Sbjct: 241 GVKQVDPWQRQYLNEKTNENFQVGATDPFPSQHVAPSSFTTRNALAPLPSNSMPNGIGNG 300
Query: 301 XXXXXXXXXXXPTKSVLSKVMDLMFGL 327
PTKSVLSKVMDLMFGL
Sbjct: 301 SGRGASGAIASPTKSVLSKVMDLMFGL 327
>Os05g0520100 MPPN family protein
Length = 353
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 93/186 (50%), Gaps = 25/186 (13%)
Query: 167 SAGRVDEEEWVTVFGFLPGDTNLVLREFEKCGIVLRHVPGPRD----------------- 209
G VD EEW+TVFGF DTNLV+REFEKCG++LRH GPRD
Sbjct: 168 GGGEVDREEWITVFGFSLKDTNLVIREFEKCGVILRHHSGPRDEFHIVDMTKLTIFSPGL 227
Query: 210 -----ANWMHILYQSRHDAQKALTKHGQQLNSVLIIGVKQVDPWQRQYLNEKTNENFQVG 264
++++ + +DA+KAL K+G QL+S +IIGVK +DP RQ L+E+ N Q G
Sbjct: 228 GLILTIMFVYLALKHSYDARKALQKNGVQLSSGVIIGVKPIDPMHRQQLDERFAGNKQGG 287
Query: 265 ATDPFPSQHVAPSSFTTRNALAPLPSNSMPXXXXXXXXXX---XXXXXXXPTKSVLSKVM 321
P + + N L LP P P KS+++ VM
Sbjct: 288 FMVSLPPKSLVLKGTGASNQLGALPRPYDPKANTNVIRDANRRATGSVAAPAKSLVTNVM 347
Query: 322 DLMFGL 327
DL+FG+
Sbjct: 348 DLIFGI 353
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,081,195
Number of extensions: 335410
Number of successful extensions: 980
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 975
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)