BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0519900 Os05g0519900|AK067224
         (787 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0519900  Similar to Itm1 protein (Fragment)                 1330   0.0  
Os04g0675500  Similar to Itm1 protein                             378   e-105

>Os05g0519900 Similar to Itm1 protein (Fragment)
          Length = 787

 Score = 1330 bits (3441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/787 (84%), Positives = 666/787 (84%)

Query: 1   MAEPESSTAAAGGSRLRNACGGVLCAFTLLLIGVLAFSIRLFSVIKYESVIHEFDPYFNF 60
           MAEPESSTAAAGGSRLRNACGGVLCAFTLLLIGVLAFSIRLFSVIKYESVIHEFDPYFNF
Sbjct: 1   MAEPESSTAAAGGSRLRNACGGVLCAFTLLLIGVLAFSIRLFSVIKYESVIHEFDPYFNF 60

Query: 61  RVTQFLSKNGIYEFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVET 120
           RVTQFLSKNGIYEFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVET
Sbjct: 61  RVTQFLSKNGIYEFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVET 120

Query: 121 VCVFTAPIFSANASWATYLLTKEAKGTXXXXXXXXXXXXVPSYISRSVAGSYDNEAVAIF 180
           VCVFTAPIFSANASWATYLLTKEAKGT            VPSYISRSVAGSYDNEAVAIF
Sbjct: 121 VCVFTAPIFSANASWATYLLTKEAKGTGAGLMAAAILAMVPSYISRSVAGSYDNEAVAIF 180

Query: 181 ALIFTFYLYVKTLNTGSLFYATLNALSYFYMVCSWGGYTFIINLIPIHVLLCIVTGRYSS 240
           ALIFTFYLYVKTLNTGSLFYATLNALSYFYMVCSWGGYTFIINLIPIHVLLCIVTGRYSS
Sbjct: 181 ALIFTFYLYVKTLNTGSLFYATLNALSYFYMVCSWGGYTFIINLIPIHVLLCIVTGRYSS 240

Query: 241 RLYIAYAPLVILGTLLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGLLTPRL 300
           RLYIAYAPLVILGTLLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGLLTPRL
Sbjct: 241 RLYIAYAPLVILGTLLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGLLTPRL 300

Query: 301 FKVAMTLVITVGXXXXXXXXXXXXXXXXSSPTKGWSGRSLSLLDPTYASKYIPIIASVSE 360
           FKVAMTLVITVG                SSPTKGWSGRSLSLLDPTYASKYIPIIASVSE
Sbjct: 301 FKVAMTLVITVGLAVCFAVIAILIALVASSPTKGWSGRSLSLLDPTYASKYIPIIASVSE 360

Query: 361 HQPPTWPSYFMDINVLAFLIPAGIISCFLPLSDASSFVVLYLVTAVYFSGVMVRLMLVLA 420
           HQPPTWPSYFMDINVLAFLIPAGIISCFLPLSDASSFVVLYLVTAVYFSGVMVRLMLVLA
Sbjct: 361 HQPPTWPSYFMDINVLAFLIPAGIISCFLPLSDASSFVVLYLVTAVYFSGVMVRLMLVLA 420

Query: 421 PAACILSGIALSEAFDVLTRSVKYQLSKLFDDXXXXXXXXXXXXXXXXXXXXXXXKNETR 480
           PAACILSGIALSEAFDVLTRSVKYQLSKLFDD                       KNETR
Sbjct: 421 PAACILSGIALSEAFDVLTRSVKYQLSKLFDDSPAASGDSSAESSSASTVSTNSAKNETR 480

Query: 481 PEKTETAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEASXXXXXXXXXXXXFYV 540
           PEKTETAP                                 MEAS            FYV
Sbjct: 481 PEKTETAPKEKPSKKNRKKEKEVAESVPVKPKKEKKLLVLPMEASVLGILLLIVLGGFYV 540

Query: 541 VHCVWAAAEAYSAPSIVLTSRSRDGLHVFDDFREAYAWLSHNTDVDDKVASWWDYGYQTT 600
           VHCVWAAAEAYSAPSIVLTSRSRDGLHVFDDFREAYAWLSHNTDVDDKVASWWDYGYQTT
Sbjct: 541 VHCVWAAAEAYSAPSIVLTSRSRDGLHVFDDFREAYAWLSHNTDVDDKVASWWDYGYQTT 600

Query: 601 AMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDXXXXXXXXXXXXXXPSDDI 660
           AMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLD              PSDDI
Sbjct: 601 AMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDI 660

Query: 661 NKFLWMVRIGGGVFPHIKEPDYLRDGNYRVDAQGTPTMLNCLMYKLCYYRFVETDGKGFD 720
           NKFLWMVRIGGGVFPHIKEPDYLRDGNYRVDAQGTPTMLNCLMYKLCYYRFVETDGKGFD
Sbjct: 661 NKFLWMVRIGGGVFPHIKEPDYLRDGNYRVDAQGTPTMLNCLMYKLCYYRFVETDGKGFD 720

Query: 721 RVRGYEIGKKHFKLTHFEEVFTTHHWMVRIYKLKPQKNRVRXXXXXXXXXXXASSTNAAG 780
           RVRGYEIGKKHFKLTHFEEVFTTHHWMVRIYKLKPQKNRVR           ASSTNAAG
Sbjct: 721 RVRGYEIGKKHFKLTHFEEVFTTHHWMVRIYKLKPQKNRVRGKLKKLKSGSKASSTNAAG 780

Query: 781 RKKNPWQ 787
           RKKNPWQ
Sbjct: 781 RKKNPWQ 787



>Os04g0675500 Similar to Itm1 protein
          Length = 721

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/420 (51%), Positives = 280/420 (66%), Gaps = 12/420 (2%)

Query: 29  LLLIGVLAFSIRLFSVIKYESVIHEFDPYFNFRVTQFLSKNGIYEFWNWFDDRTWYPLGR 88
           L LI VLAF +RLFSV++YES+IHEFDPYFN+R T FLS +G  EFWNWFD  +WYPLGR
Sbjct: 33  LALIYVLAFVVRLFSVLRYESMIHEFDPYFNYRTTLFLSDHGFSEFWNWFDFESWYPLGR 92

Query: 89  VIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSANASWATYLLTKEAKGTX 148
           V+GGT++PGL +TA  +  LL +L++ + +  VCV TAP F+AN +   Y   +E   + 
Sbjct: 93  VVGGTLFPGLMVTAALLHRLLRALSLAVHIREVCVLTAPFFAANTTLVAYAFGREIWDSG 152

Query: 149 XXXXXXXXXXXVPSYISRSVAGSYDNEAVAIFALIFTFYLYVKTLNTGSLFYATLNALSY 208
                       P YISRSVAGSYDNE VAIFAL+ TFYL+V+ +NTGSL ++  +A  Y
Sbjct: 153 AGLVAAALIAVCPGYISRSVAGSYDNEGVAIFALLLTFYLFVRAVNTGSLAWSLASAFGY 212

Query: 209 FYMVCSWGGYTFIINLIPIHVLLCIVTGRYSSRLYIAYAPLVILGTLLAALVPVVGFNAV 268
           FYMV +WGGY FIINL+P++VL+ +VTGRYS RLY+AY    +LG LLA  +  VGF  V
Sbjct: 213 FYMVSAWGGYVFIINLLPLYVLVLLVTGRYSQRLYVAYNSTYVLGMLLAMQIRFVGFQHV 272

Query: 269 MTSEHFASFLVFIILHVVALVYYIKGLLT-PRLFK----VAMTLVITVGXXXXXXXXXXX 323
            + EH A+  VF +L V   + ++K LL   +LFK    + +T VITVG           
Sbjct: 273 QSGEHMAAMGVFFLLQVFFFLDWVKYLLNDAKLFKSFLRITLTCVITVG-------TLAL 325

Query: 324 XXXXXSSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLIPAG 383
                S     W+GR  SLLDPTYA  +IPIIASVSEHQP  W S+  D ++L FL PAG
Sbjct: 326 GIGTASGYISPWTGRFYSLLDPTYAKDHIPIIASVSEHQPTAWSSFMFDFHILLFLFPAG 385

Query: 384 IISCFLPLSDASSFVVLYLVTAVYFSGVMVRLMLVLAPAACILSGIALSEAFDVLTRSVK 443
           +  CF  LSDA+ F+V+Y +T++YF+GVMVRL+LV APA C++S IA S     LT  ++
Sbjct: 386 LYFCFKRLSDATIFIVMYGLTSMYFAGVMVRLILVAAPAVCLISAIAASATIKNLTTLIR 445




 Score =  306 bits (785), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/227 (65%), Positives = 162/227 (71%), Gaps = 6/227 (2%)

Query: 539 YVVHCVWAAAEAYSAPSIVLTSRSRDGLHV-FDDFREAYAWLSHNTDVDDKVASWWDYGY 597
           Y VHC W  +EAYS+PSIVL +R  +G  V FDD+REAY WL  NT  D K+ SWWDYGY
Sbjct: 494 YAVHCTWVTSEAYSSPSIVLAARGHNGGRVIFDDYREAYYWLRQNTPSDAKIMSWWDYGY 553

Query: 598 QTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDXXXXXXXXXXXXXXPS 657
           Q TAM NRTVIVDNNTWNNTHIATVG AMSS E  A+EI  SLD               S
Sbjct: 554 QITAMGNRTVIVDNNTWNNTHIATVGRAMSSYEDEAYEIMQSLDVNYVLVVFGGVTGYSS 613

Query: 658 DDINKFLWMVRIGGGVFPHIKEPDYLRDGNYRVDAQGTPTMLNCLMYKLCYYRFVETD-- 715
           DDINKFLWMVRIGGGVFP IKEPDYL +G YRVD    P MLNCLMYKLCYYRF E    
Sbjct: 614 DDINKFLWMVRIGGGVFPVIKEPDYLVNGEYRVDKGAAPKMLNCLMYKLCYYRFGELTTE 673

Query: 716 -GK--GFDRVRGYEIGKKHFKLTHFEEVFTTHHWMVRIYKLKPQKNR 759
            GK  G+DRVRG EIG K  KL + EE FTT +W+VRIYK+KP KNR
Sbjct: 674 YGKPPGYDRVRGVEIGNKDIKLEYLEEAFTTSNWIVRIYKVKPPKNR 720



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,013,736
Number of extensions: 827906
Number of successful extensions: 2005
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1997
Number of HSP's successfully gapped: 3
Length of query: 787
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 678
Effective length of database: 11,344,475
Effective search space: 7691554050
Effective search space used: 7691554050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 160 (66.2 bits)