Os04g0675500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Itm1 protein.
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Os04g0675500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Itm1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.7 | 0.351 | 9.92 | 1.39 | 0.835 | 0.988 | 0.344 | 0.484 | 0.445 | 19.8 | 0.9894 | 1369 | -- | -- |
| 55.51 | 0.347 | 9.91 | 1.4 | 0.821 | 0.866 | 0.276 | -- | 0.457 | 19.8 | 2.19 | 1362 | -- | -- |
| 55.5 | 0.347 | 9.9 | 1.45 | 0.829 | 0.829 | -- | -0.588 | 0.478 | 19.9 | 2.576 | 1353 | -- | -- |
| 55.72 | 0.348 | 9.91 | 1.39 | 0.835 | 0.87 | -- | -- | 0.459 | 19.8 | 2.197 | 1362 | -- | -- |
| 82.69 | 0.424 | 9.9 | 1.41 | -- | 0.854 | -- | -0.295 | 0.455 | -- | 2.58 | 1477 | -- | -- |
| 64.1 | 0.375 | 9.93 | 1.23 | 0.731 | -- | 0.246 | -- | 0.349 | 19.1 | -- | -- | -- | -- |
| 64.26 | 0.375 | 9.93 | 1.22 | 0.731 | -- | -- | -- | 0.349 | 19.1 | -- | -- | -- | -- |
| 82.73 | 0.424 | 9.9 | 1.38 | -- | 0.909 | -- | -- | 0.451 | -- | 2.296 | 1480 | -- | -- |
| 98.56 | 0.462 | 9.94 | -- | 0.771 | 0.436 | -- | -- | 0.301 | 19.6 | 10 | 1380 | -- | -- |
| 92.49 | 0.449 | 9.92 | 1.21 | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
| 103.58 | 0.476 | 9.96 | -- | 0.719 | -- | -- | -- | 0.213 | 19.2 | -- | -- | -- | -- |
| 124.76 | 0.52 | 9.93 | -- | -- | 0.51 | -- | -- | 0.297 | -- | 10 | 1497 | -- | -- |
| 130.96 | 0.534 | 9.95 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.33 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 2 | 52.34 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 6 | 53.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 9 | 53.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 13 | 53.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 14 | 53.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 16 | 53.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 21 | 53.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 25 | 53.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 26 | 53.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 31 | 53.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 34 | 53.71 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 38 | 53.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 41 | 53.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 102 | 53.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 107 | 53.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 154 | 53.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 161 | 53.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 162 | 53.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 233 | 54.09 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 245 | 54.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 252 | 54.17 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 253 | 54.17 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 255 | 54.18 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 262 | 54.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 264 | 54.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 265 | 54.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 269 | 54.21 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 270 | 54.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 291 | 54.29 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 321 | 54.34 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 2 |
| 350 | 54.43 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 381 | 54.55 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 400 | 54.58 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 417 | 54.61 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 604 | 54.92 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 687 | 55.11 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 19 |
| 754 | 55.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 800 | 55.36 | humidity | 90 | 720 | > th | dose dependent | sin | 17 | NA |
| 820 | 55.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 978 | 55.72 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 990 | 55.74 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 8 |