BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0513600 Os05g0513600|AK106888
(416 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0513600 Conserved hypothetical protein 423 e-119
Os05g0313700 Conserved hypothetical protein 70 2e-12
>Os05g0513600 Conserved hypothetical protein
Length = 416
Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/416 (58%), Positives = 245/416 (58%)
Query: 1 MLGGGFNLRLVPSFXXXXXXXXXXXXXXXXXXXXXXXXXXPAAAVVPCRRDMKRRLQEEI 60
MLGGGFNLRLVPSF PAAAVVPCRRDMKRRLQEEI
Sbjct: 1 MLGGGFNLRLVPSFPPEVEAPMAAAAAMAAVAMSGSMEASPAAAVVPCRRDMKRRLQEEI 60
Query: 61 DAVRGLLGKAEALVAVASEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELDRARDR 120
DAVRGLLGKAEALVAVASED EELDRARDR
Sbjct: 61 DAVRGLLGKAEALVAVASEDVNGSAAASASAVAKRSPRRVRSPPRRGRSNREELDRARDR 120
Query: 121 RHGGRSDREVFXXXXXXXXXXXXXXXXEVFDRARKIPRRRPHEAESEPRKIEAAAGAPPQ 180
RHGGRSDREVF EVFDRARKIPRRRPHEAESEPRKIEAAAGAPPQ
Sbjct: 121 RHGGRSDREVFDRGRDRRHGGRSDRDREVFDRARKIPRRRPHEAESEPRKIEAAAGAPPQ 180
Query: 181 CQAKDGEIAPAMDASPSLCEREEGEIADDHGAALDIDIDIPRGGAISPLVVNKAQSSPLA 240
CQAKDGEIAPAMDASPSLCEREEGEIADDHGAALDIDIDIPRGGAISPLVVNKAQSSPLA
Sbjct: 181 CQAKDGEIAPAMDASPSLCEREEGEIADDHGAALDIDIDIPRGGAISPLVVNKAQSSPLA 240
Query: 241 KNDDDDELVDISGEASPVAIENFPEATKXXXXXXXXXXXLGNYSXXXXXXXXXXXESSKK 300
KNDDDDELVDISGEASPVAIENFPEATK LGNYS ESSKK
Sbjct: 241 KNDDDDELVDISGEASPVAIENFPEATKSSISPSSDEPSLGNYSGDDDDDDGDDGESSKK 300
Query: 301 PDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLIAIAKEKQXXXXXXXXXXXXXXXXXXX 360
PD SQLIAIAKEKQ
Sbjct: 301 PDTTCLPTEAAATATTPLVAAAASPPATQTSQLIAIAKEKQRLRRELERRAAREALEAMA 360
Query: 361 XXXXXXXXXXXXTDMMQLGLFETQYIVSTEKSQDXXXXXXXXXXXXXXXXXKPEYS 416
TDMMQLGLFETQYIVSTEKSQD KPEYS
Sbjct: 361 RAARPIRDDIAATDMMQLGLFETQYIVSTEKSQDSLRRGSGGLLQQLGFFLKPEYS 416
>Os05g0313700 Conserved hypothetical protein
Length = 607
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 12/92 (13%)
Query: 178 PPQCQAKDGEIAPAMDASPSLCER-EEGEIADDHGAALDIDIDIPRGGAISPLVVNKAQS 236
PP+ +A D +S S+C+ E+GEIAD+ GAA+ +DI G +SPL+V+ AQ
Sbjct: 187 PPKIEASDA------TSSSSICDLLEDGEIADE-GAAMGMDI----CGGVSPLIVDSAQL 235
Query: 237 SPLAKNDDDDELVDISGEASPVAIENFPEATK 268
PL K +DDEL+DI G SPV++ NFP++ +
Sbjct: 236 LPLPKQQEDDELIDIYGGVSPVSVNNFPDSPR 267
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,826,122
Number of extensions: 325504
Number of successful extensions: 1060
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1052
Number of HSP's successfully gapped: 3
Length of query: 416
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 313
Effective length of database: 11,657,759
Effective search space: 3648878567
Effective search space used: 3648878567
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)