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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0313700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0531) R2 : 0.0791
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.12 (0.176) R2dE : 0.0861 R2E : 0.0547
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.362 (0.115) R2dN8 : 0.0244 R2N8 : -0.00707
σ : 0.99
deviance : 451.54
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 27.54
memory length : 2123
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
432.92 0.978 4.36 -0.83 0.696 0.767 0.919 -1.26 -0.436 18.8 30.17 1444 -- --
436.5 0.973 4.35 -0.665 0.734 0.766 0.945 -- -0.385 18.8 30.19 1441 -- --
434.96 0.971 4.36 -0.847 0.702 0.773 -- -1.27 -0.436 18.6 30.19 1442 -- --
437.12 0.974 4.33 -0.602 0.715 0.793 -- -- -0.373 18.3 26.14 1400 -- --
443.79 0.981 4.31 -0.67 -- 1.08 -- -1.65 -0.364 -- 26.15 2104 -- --
456.22 1 4.29 -0.421 0.687 -- 0.956 -- -0.163 19.1 -- -- -- --
458.49 1 4.29 -0.439 0.693 -- -- -- -0.16 18.8 -- -- -- --
444.63 0.982 4.32 -0.527 -- 1.12 -- -- -0.377 -- 26.13 2117 -- --
444.85 0.982 4.34 -- 0.717 0.814 -- -- -0.284 18.5 29.91 1424 -- --
483.66 1.03 4.27 -0.454 -- -- -- -- -0.174 -- -- -- -- --
463.56 1.01 4.27 -- 0.698 -- -- -- -0.111 18.8 -- -- -- --
451.54 0.99 4.33 -- -- 1.12 -- -- -0.362 -- 27.54 2123 -- --
489.09 1.03 4.26 -- -- -- -- -- -0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 421.40 temperature 15 10 > th dose dependent rect. 12 18
15 428.09 temperature 15 10 > th dose dependent rect. 12 15
21 428.73 radiation 10 1440 < th dose independent rect. 16 14
25 429.04 temperature 20 10 > th dose dependent rect. 12 12
31 429.62 humidity 90 10 < th dose independent rect. 6 6
45 430.14 radiation 10 1440 < th dose independent rect. 16 2
47 430.14 temperature 20 10 > th dose dependent rect. 12 10
48 430.17 radiation 10 1440 > th dose dependent rect. 16 16
52 430.34 humidity 90 30 < th dose independent rect. 4 8
56 430.46 radiation 10 1440 < th dose independent rect. 16 9
58 430.49 radiation 10 1440 < th dose independent rect. 16 6
60 430.52 radiation 10 1440 < th dose independent rect. 16 4
68 430.71 temperature 25 270 < th dose independent rect. 6 16
70 430.87 radiation 20 1440 > th dose independent rect. 16 16
77 431.02 radiation 30 1440 < th dose independent rect. 12 2
82 431.23 radiation 30 1440 > th dose independent rect. 12 2
85 431.29 radiation 1 1440 > th dose dependent rect. 16 18
86 431.30 temperature 25 10 > th dose dependent rect. 13 1
94 431.49 radiation 1 1440 > th dose dependent sin 11 NA
95 431.56 radiation 40 1440 < th dose dependent rect. 16 18
111 431.75 radiation 40 1440 < th dose dependent sin 11 NA
128 432.05 radiation 30 1440 > th dose independent rect. 16 21
129 432.06 radiation 30 1440 < th dose independent rect. 12 20
138 432.12 radiation 30 1440 > th dose independent rect. 7 6
154 432.14 temperature 25 90 > th dose independent rect. 12 1
176 432.26 radiation 40 1440 > th dose dependent rect. 12 22
177 432.27 radiation 30 30 > th dose independent rect. 12 4
196 432.30 radiation 30 1440 > th dose independent rect. 9 4
207 432.44 wind 3 30 < th dose dependent rect. 1 7
233 432.56 radiation 30 1440 < th dose independent rect. 2 11
235 432.57 radiation 30 1440 < th dose independent rect. 24 13
236 432.57 radiation 30 1440 < th dose independent rect. 21 16
237 432.57 radiation 20 1440 < th dose independent rect. 16 19
238 432.57 radiation 30 1440 < th dose independent rect. 12 22
245 432.59 radiation 1 1440 > th dose dependent rect. 16 21
248 432.61 radiation 30 1440 > th dose independent sin 4 NA
254 432.62 radiation 30 30 > th dose independent rect. 12 2
255 432.62 radiation 30 1440 < th dose independent rect. 6 7
269 432.71 radiation 20 1440 < th dose independent sin 11 NA
271 432.72 atmosphere 1000 30 > th dose dependent rect. 24 11
277 432.76 radiation 30 1440 < th dose independent sin 7 NA
328 432.95 radiation 1 1440 > th dose dependent rect. 7 1
335 432.97 radiation 30 1440 > th dose independent rect. 11 23
340 433.01 radiation 30 1440 > th dose independent no NA NA
447 433.01 wind 3 10 < th dose dependent rect. 1 5
449 433.02 temperature 10 270 > th dose dependent rect. 10 17
451 433.03 radiation 1 1440 > th dose dependent rect. 4 7
464 433.05 radiation 20 1440 > th dose independent sin 11 NA
478 433.05 radiation 30 1440 > th dose independent rect. 11 21
482 433.05 radiation 40 1440 > th dose dependent rect. 12 1
487 433.07 radiation 20 1440 > th dose dependent rect. 6 7
511 433.13 radiation 10 1440 < th dose independent sin 13 NA
513 433.14 radiation 30 1440 > th dose independent rect. 9 23
533 433.19 radiation 40 1440 < th dose dependent rect. 2 9
540 433.21 temperature 20 30 > th dose independent rect. 6 6
543 433.21 temperature 10 270 > th dose dependent rect. 10 19
548 433.22 radiation 40 1440 < th dose dependent rect. 24 11
550 433.22 radiation 40 1440 < th dose dependent rect. 21 14
607 433.29 radiation 1 90 > th dose dependent sin 10 NA
608 433.30 radiation 10 1440 > th dose dependent rect. 5 3
641 433.39 radiation 40 1440 < th dose dependent rect. 7 1
687 433.48 radiation 30 1440 < th dose independent rect. 12 17
694 433.51 radiation 30 1440 < th dose independent rect. 12 5
704 433.51 radiation 30 1440 < th dose independent rect. 12 13
715 433.52 radiation 30 1440 < th dose independent rect. 12 10
736 433.60 atmosphere 1005 30 > th dose independent rect. 24 11
751 433.67 radiation 20 1440 > th dose dependent rect. 12 2
873 433.91 radiation 30 1440 < th dose independent rect. 3 19
878 433.91 radiation 20 1440 > th dose dependent rect. 12 22
905 433.92 radiation 30 1440 < th dose independent rect. 3 22
908 433.92 radiation 30 1440 < th dose independent rect. 24 22
910 433.92 radiation 30 1440 < th dose independent rect. 6 23
913 433.93 radiation 30 1440 < th dose independent no NA NA
941 433.94 radiation 30 1440 < th dose independent rect. 6 16
967 433.95 humidity 60 720 > th dose independent rect. 18 18
969 433.95 radiation 30 1440 < th dose independent rect. 6 19