BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0510100 Os05g0510100|Os05g0510100
(237 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0510100 Protein of unknown function DUF567 family protein 325 2e-89
Os01g0771000 Protein of unknown function DUF567 family protein 166 1e-41
>Os05g0510100 Protein of unknown function DUF567 family protein
Length = 237
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 176/237 (74%), Positives = 176/237 (74%)
Query: 1 MAQQQRMVIVGEEHCGGGEDRELTVRKTTLFCPGDGLEAYDHGTGTLAFRVETYXXXXXX 60
MAQQQRMVIVGEEHCGGGEDRELTVRKTTLFCPGDGLEAYDHGTGTLAFRVETY
Sbjct: 1 MAQQQRMVIVGEEHCGGGEDRELTVRKTTLFCPGDGLEAYDHGTGTLAFRVETYGRGGVC 60
Query: 61 XXXXXXXXXXXXXXXXEPVLTVRRRRPSLHHRWDGFLGDGAASGQKPLFSARRSSILGVG 120
EPVLTVRRRRPSLHHRWDGFLGDGAASGQKPLFSARRSSILGVG
Sbjct: 61 GGGAAAGDLALLGPEGEPVLTVRRRRPSLHHRWDGFLGDGAASGQKPLFSARRSSILGVG 120
Query: 121 SGAAAVLVDLLAPGAAGEFRVDGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
SGAAAVLVDLLAPGAAGEFRVDGSF
Sbjct: 121 SGAAAVLVDLLAPGAAGEFRVDGSFPRRCCRVVAVKAAAPAGGGGEEEEEEVVVAEVRRK 180
Query: 181 XXXXAHVVMGRDVFVLWLRAGFDAAFAMGIVLVLDRITGDELNGDLSEDLAVASSPV 237
AHVVMGRDVFVLWLRAGFDAAFAMGIVLVLDRITGDELNGDLSEDLAVASSPV
Sbjct: 181 VDEDAHVVMGRDVFVLWLRAGFDAAFAMGIVLVLDRITGDELNGDLSEDLAVASSPV 237
>Os01g0771000 Protein of unknown function DUF567 family protein
Length = 227
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 126/233 (54%), Gaps = 23/233 (9%)
Query: 7 MVIVGEEHCGGGEDRELTVRKTTLFCPGDGLEAYDHGTGTLAFRVETYXXXXXXXXXXXX 66
M IVGEE+C E+R LTVRKT+ F PGDG AYDH TG LAFR +TY
Sbjct: 1 MAIVGEEYCSA-EERVLTVRKTSHFSPGDGFAAYDHRTGGLAFRADTY-GRGHGGGAASA 58
Query: 67 XXXXXXXXXXEPVLTVRRRRPSLHHRWDGFLGDGAASGQKPLFSARRSSILGVGSGAAAV 126
E ++TVRRRRPSLH RW+G+LG A GQKPLFSARRSSIL G AA
Sbjct: 59 GELALLGPAGEALITVRRRRPSLHQRWEGYLG-ARADGQKPLFSARRSSIL--GGAAAGA 115
Query: 127 LVDLLAP----------GAAGEFRVDGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 176
+V+LLAP AA RVDGSF
Sbjct: 116 VVELLAPLPASFSSTHAAAAELLRVDGSF--------PRRCCRVVAPKAESGGEAAVVAE 167
Query: 177 XXXXXXXXAHVVMGRDVFVLWLRAGFDAAFAMGIVLVLDRITGDELNGDLSED 229
A VVMGRDVFVL + AGFDAAFAM IVLVLD+I GDE +G+ E+
Sbjct: 168 IRRKVDEGARVVMGRDVFVLRVGAGFDAAFAMAIVLVLDQIAGDEADGNAGEE 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,767,180
Number of extensions: 248739
Number of successful extensions: 672
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 4
Length of query: 237
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 139
Effective length of database: 11,918,829
Effective search space: 1656717231
Effective search space used: 1656717231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)