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Os05g0510100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF567 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0204) R2 : 0.876
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.02 (0.0532) R2dC : 0.879 R2C : 0.874
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.096 (0.043) R2dN8 : 0.00175 R2N8 : -0.00239
σ : 0.385
deviance : 67.84
__
_____
C
peak time of C : 6.98
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.28 0.356 12.4 0.291 3.01 -0.538 -0.71 2.48 0.163 7.01 50.01 4388 -- --
60.07 0.361 12.3 0.288 3 0.301 -0.641 -- 0.0735 6.99 47.66 14947 -- --
58.59 0.357 12.4 0.279 3.01 -0.535 -- 2.47 0.164 7.01 50.07 4389 -- --
60.48 0.362 12.3 0.338 3.01 0.347 -- -- 0.0876 7.03 46.25 13203 -- --
293.09 0.797 12.3 0.794 -- 2.45 -- 1.83 0.33 -- 73.12 549 -- --
62.95 0.372 12.3 0.386 3.02 -- -0.684 -- 0.136 6.98 -- -- -- --
64.17 0.375 12.3 0.373 3.01 -- -- -- 0.138 6.98 -- -- -- --
275.83 0.774 12.3 0.749 -- 2.4 -- -- 0.346 -- 74 560 -- --
62.96 0.37 12.3 -- 3.02 0.339 -- -- 0.0606 6.99 48 15090 -- --
541.38 1.09 12.4 0.435 -- -- -- -- 0.193 -- -- -- -- --
67.84 0.385 12.3 -- 3.02 -- -- -- 0.096 6.98 -- -- -- --
284.22 0.785 12.4 -- -- 2.35 -- -- 0.232 -- 74.57 560 -- --
546.37 1.09 12.4 -- -- -- -- -- 0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.26 atmosphere 1015 4320 > th dose independent rect. 10 1
2 56.32 atmosphere 1015 4320 < th dose independent rect. 10 1
22 56.70 atmosphere 1015 4320 > th dose dependent rect. 8 3
29 56.77 radiation 1 1440 > th dose independent rect. 11 5
49 56.86 temperature 30 270 < th dose dependent rect. 5 3
51 56.87 radiation 1 1440 > th dose independent rect. 9 7
52 56.87 radiation 1 1440 < th dose dependent rect. 15 1
54 56.88 radiation 1 1440 < th dose independent rect. 9 7
56 56.89 humidity 70 14400 > th dose independent rect. 21 11
58 56.89 atmosphere 995 43200 < th dose dependent rect. 15 7
64 56.91 atmosphere 995 43200 > th dose independent rect. 14 8
67 56.92 atmosphere 995 43200 < th dose independent rect. 14 8
68 56.92 temperature 20 720 > th dose dependent rect. 2 3
69 56.93 humidity 50 4320 > th dose independent sin 4 NA
72 56.94 radiation 1 1440 < th dose independent rect. 11 5
78 56.96 humidity 80 1440 < th dose independent rect. 7 6
109 57.03 temperature 20 90 > th dose independent rect. 15 11
140 57.08 humidity 70 14400 > th dose independent rect. 24 8
145 57.08 humidity 50 4320 > th dose independent rect. 1 15
146 57.08 humidity 50 4320 > th dose independent rect. 18 22
147 57.08 humidity 50 4320 > th dose independent rect. 16 23
150 57.09 humidity 50 4320 > th dose independent rect. 7 9
157 57.10 atmosphere 995 43200 > th dose independent rect. 15 3
160 57.10 humidity 80 1440 < th dose independent rect. 3 10
161 57.10 humidity 50 4320 > th dose independent rect. 4 12
164 57.10 humidity 50 4320 > th dose independent rect. 23 17
173 57.11 atmosphere 995 43200 < th dose independent rect. 15 2
182 57.12 humidity 70 14400 > th dose independent rect. 2 6
199 57.15 atmosphere 1015 4320 > th dose independent sin 1 NA
200 57.15 atmosphere 1015 4320 < th dose independent sin 1 NA
281 57.20 atmosphere 995 43200 < th dose dependent rect. 15 4
298 57.21 temperature 20 10 > th dose independent rect. 22 12
315 57.23 humidity 70 1440 > th dose independent rect. 9 2
360 57.27 atmosphere 1015 4320 > th dose dependent sin 2 NA
366 57.28 humidity 80 1440 > th dose independent rect. 7 7
371 57.28 humidity 70 14400 < th dose dependent rect. 21 11
398 57.31 temperature 20 270 > th dose independent rect. 13 12
418 57.32 humidity 50 4320 > th dose independent rect. 6 18
420 57.32 humidity 50 4320 > th dose independent rect. 1 23
425 57.33 humidity 50 4320 < th dose independent sin 6 NA
427 57.33 atmosphere 1000 30 > th dose independent rect. 24 10
437 57.33 humidity 50 4320 > th dose independent rect. 8 16
444 57.33 humidity 50 4320 > th dose independent rect. 4 20
445 57.33 humidity 50 4320 > th dose independent rect. 6 20
450 57.33 humidity 50 4320 > th dose independent rect. 8 21
463 57.34 humidity 50 4320 > th dose independent no NA NA
523 57.35 humidity 50 4320 > th dose independent rect. 10 14
556 57.35 humidity 50 4320 > th dose independent rect. 10 23
559 57.36 humidity 50 4320 < th dose independent sin 8 NA
563 57.36 humidity 70 1440 < th dose independent rect. 9 2
586 57.36 humidity 80 4320 < th dose dependent rect. 8 1
607 57.37 radiation 1 43200 < th dose dependent rect. 1 1
636 57.40 humidity 50 4320 > th dose independent rect. 1 10
640 57.40 humidity 50 4320 > th dose independent rect. 13 23
641 57.40 humidity 80 1440 < th dose dependent rect. 8 3
646 57.41 humidity 80 1440 > th dose independent rect. 3 11
685 57.43 humidity 70 14400 < th dose independent rect. 21 11
692 57.43 humidity 70 14400 < th dose dependent rect. 6 2
730 57.45 humidity 50 4320 < th dose independent rect. 17 21
732 57.45 humidity 80 1440 < th dose dependent rect. 8 5
738 57.46 temperature 10 270 > th dose dependent rect. 1 12
748 57.47 humidity 70 720 < th dose independent rect. 16 19
760 57.48 radiation 10 1440 > th dose independent rect. 11 2
805 57.50 temperature 10 720 > th dose dependent rect. 1 4
819 57.51 humidity 80 1440 < th dose dependent rect. 24 13
822 57.51 humidity 80 1440 < th dose dependent rect. 21 16
828 57.52 temperature 20 10 > th dose dependent rect. 3 13
833 57.53 humidity 70 14400 < th dose independent rect. 6 2
851 57.53 humidity 80 1440 < th dose dependent rect. 3 10
863 57.54 humidity 80 1440 < th dose dependent rect. 5 8
892 57.57 humidity 50 4320 > th dose independent sin 9 NA
902 57.57 humidity 80 1440 < th dose dependent sin 7 NA
976 57.61 temperature 20 10 > th dose independent rect. 16 18