BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0510100 Os05g0510100|Os05g0510100
(237 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221 116 1e-26
AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211 97 8e-21
>AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221
Length = 220
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 101/203 (49%), Gaps = 26/203 (12%)
Query: 19 EDRELTVRKTTLFCPGDGLEAYDHGTGTLAFRVETYXXXXXXXXXXXXXXXXXXXXXXEP 78
ED+ LTV KT+LF GDG AYD G + FRV++Y +
Sbjct: 29 EDKPLTVCKTSLFYTGDGFAAYD-CRGDIIFRVDSYGPDTRDNDEIVLMDATG-----KC 82
Query: 79 VLTVRRRRPSLHHRWDGFLGDGAASGQKPLFSARRSSILGVGSGAAAVLVDLLAPGAAGE 138
+LTV+R+RP+LH RW+GFLG+ + GQKP+FS RRSSI+G + V G E
Sbjct: 83 LLTVKRKRPTLHQRWEGFLGE-RSEGQKPIFSVRRSSIIGRCTMEVEVY-----DGTGEE 136
Query: 139 FRVDGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVVMGRDVFVLWL 198
+ +DG F +V++GRDVF L +
Sbjct: 137 YIIDGDF--------------SQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEI 182
Query: 199 RAGFDAAFAMGIVLVLDRITGDE 221
+ GFD AFAMG+V+VLD+I GD+
Sbjct: 183 KPGFDGAFAMGLVVVLDQINGDD 205
>AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211
Length = 210
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 104/205 (50%), Gaps = 23/205 (11%)
Query: 18 GEDRELTVRKTTLFCPGDGLEAYDHGTGTLAFRVETYXXXXXXXXXXXXXXXXXXXXXXE 77
GE+R LTVRKT+LF GDG YD G+L FRV++Y
Sbjct: 14 GEERSLTVRKTSLFFAGDGFTVYDC-KGSLVFRVDSY----GGPNTRDTDEVVLMDAHGR 68
Query: 78 PVLTVRRRRPSLHHRWDGFLGDGAASGQKPLFSARRSSILGVGSGAAAVLVDLLAPGAAG 137
+LT+RR+RPSL RW+G+LG+ + GQKP+F RRSSI+G S V V++
Sbjct: 69 CLLTLRRKRPSLRRRWEGYLGE-RSDGQKPIFGVRRSSIIGRNS----VTVEVYGDYQCS 123
Query: 138 EFRVDGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVVMGRDVFVLW 197
E+ ++GSF +V++G+DVF L
Sbjct: 124 EYLIEGSF-------------GARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLN 170
Query: 198 LRAGFDAAFAMGIVLVLDRITGDEL 222
++ GFD AFAMG+VLVLD+I GD+L
Sbjct: 171 VKPGFDGAFAMGLVLVLDQIYGDDL 195
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,822,843
Number of extensions: 120862
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 4
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)