Os01g0771000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF567 family protein.
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Os01g0771000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF567 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 269.42 | 0.771 | 3.38 | 0.101 | 0.45 | 1.48 | -1.96 | 2.09 | 0.195 | 11.4 | 2.182 | 30 | -- | -- |
| 275.65 | 0.773 | 3.38 | 0.235 | 0.395 | 1.61 | -1.16 | -- | 0.199 | 10.5 | 2.407 | 30 | -- | -- |
| 281.05 | 0.781 | 3.38 | 0.0532 | 0.733 | 1.27 | -- | 1.55 | 0.235 | 11.2 | 8.886 | 30 | -- | -- |
| 276.97 | 0.775 | 3.39 | 0.0827 | 0.428 | 1.5 | -- | -- | 0.183 | 10.6 | 0.9516 | 30 | -- | -- |
| 282.26 | 0.782 | 3.4 | 0.0615 | -- | 1.92 | -- | 0.393 | 0.176 | -- | -0.003408 | 30 | -- | -- |
| 302.69 | 0.816 | 3.35 | 0.125 | 1.25 | -- | -0.784 | -- | 0.242 | 11.8 | -- | -- | -- | -- |
| 305.36 | 0.818 | 3.35 | 0.093 | 1.25 | -- | -- | -- | 0.238 | 11.8 | -- | -- | -- | -- |
| 282.24 | 0.782 | 3.39 | 0.081 | -- | 1.9 | -- | -- | 0.178 | -- | -0.6404 | 31 | -- | -- |
| 277.04 | 0.775 | 3.38 | -- | 0.492 | 1.43 | -- | -- | 0.182 | 10.9 | 2.201 | 30 | -- | -- |
| 404.02 | 0.939 | 3.38 | 0.0564 | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
| 305.58 | 0.818 | 3.36 | -- | 1.25 | -- | -- | -- | 0.228 | 11.8 | -- | -- | -- | -- |
| 282.41 | 0.783 | 3.39 | -- | -- | 1.9 | -- | -- | 0.169 | -- | -1.584 | 31 | -- | -- |
| 404.1 | 0.938 | 3.38 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 263.37 | radiation | 20 | 30 | > th | dose independent | rect. | 8 | 7 |
| 18 | 265.85 | radiation | 40 | 30 | < th | dose dependent | sin | 0 | NA |
| 20 | 266.76 | radiation | 1 | 30 | > th | dose dependent | rect. | 8 | 7 |
| 21 | 267.01 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 24 | 267.07 | radiation | 1 | 30 | > th | dose dependent | rect. | 8 | 22 |
| 27 | 267.50 | radiation | 20 | 30 | > th | dose independent | sin | 1 | NA |
| 32 | 267.92 | radiation | 40 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 47 | 268.11 | radiation | 1 | 30 | > th | dose dependent | sin | 1 | NA |
| 52 | 268.42 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 10 |
| 124 | 269.25 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 155 | 269.49 | radiation | 1 | 30 | > th | dose dependent | no | NA | NA |
| 213 | 269.61 | radiation | 40 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 215 | 269.79 | radiation | 40 | 30 | < th | dose dependent | no | NA | NA |
| 216 | 269.83 | radiation | 40 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 219 | 269.89 | humidity | 80 | 30 | < th | dose independent | rect. | 8 | 7 |
| 377 | 270.33 | radiation | 20 | 30 | > th | dose independent | no | NA | NA |
| 502 | 270.70 | wind | 7 | 90 | < th | dose independent | rect. | 15 | 17 |
| 507 | 270.92 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 7 |
| 515 | 271.22 | radiation | 20 | 30 | < th | dose independent | sin | 0 | NA |
| 544 | 271.55 | radiation | 40 | 30 | < th | dose dependent | rect. | 6 | 15 |
| 552 | 271.80 | radiation | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 560 | 271.96 | radiation | 40 | 30 | < th | dose dependent | rect. | 6 | 13 |
| 579 | 272.11 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 606 | 272.40 | radiation | 20 | 30 | < th | dose independent | rect. | 6 | 15 |
| 634 | 272.58 | radiation | 30 | 30 | < th | dose independent | rect. | 3 | 18 |
| 638 | 272.65 | radiation | 30 | 30 | < th | dose independent | rect. | 3 | 16 |
| 640 | 272.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 641 | 272.75 | radiation | 40 | 30 | < th | dose dependent | rect. | 4 | 15 |
| 643 | 272.78 | radiation | 30 | 30 | < th | dose independent | rect. | 11 | 23 |
| 646 | 272.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 688 | 273.39 | radiation | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 689 | 273.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 713 | 273.48 | radiation | 20 | 30 | < th | dose independent | no | NA | NA |
| 722 | 273.62 | radiation | 40 | 30 | < th | dose dependent | rect. | 4 | 17 |
| 727 | 273.71 | radiation | 20 | 30 | < th | dose independent | rect. | 13 | 23 |
| 736 | 273.91 | radiation | 20 | 30 | < th | dose independent | rect. | 6 | 13 |
| 739 | 273.97 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 8 | 5 |
| 742 | 273.99 | radiation | 40 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 769 | 274.18 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 773 | 274.21 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 12 |
| 784 | 274.32 | wind | 7 | 10 | < th | dose independent | rect. | 8 | 7 |
| 837 | 274.52 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 839 | 274.52 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 8 | 7 |
| 845 | 274.55 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 894 | 274.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 897 | 274.73 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 5 |
| 904 | 274.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 7 |
| 905 | 274.78 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 956 | 274.97 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |