BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0771000 Os01g0771000|AK069298
(227 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0771000 Protein of unknown function DUF567 family protein 333 9e-92
Os05g0510100 Protein of unknown function DUF567 family protein 178 3e-45
>Os01g0771000 Protein of unknown function DUF567 family protein
Length = 227
Score = 333 bits (853), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 173/227 (76%), Positives = 173/227 (76%)
Query: 1 MAIVGEEYCSAEERVLTVRKTSHFSPGDGFAAYDHRTGGLAFRADTYXXXXXXXXXXXXX 60
MAIVGEEYCSAEERVLTVRKTSHFSPGDGFAAYDHRTGGLAFRADTY
Sbjct: 1 MAIVGEEYCSAEERVLTVRKTSHFSPGDGFAAYDHRTGGLAFRADTYGRGHGGGAASAGE 60
Query: 61 XXXXXXXXXXXITVRRRRPSLHQRWEGYLGARADGQKPLFSARRSSIXXXXXXXXXXXXX 120
ITVRRRRPSLHQRWEGYLGARADGQKPLFSARRSSI
Sbjct: 61 LALLGPAGEALITVRRRRPSLHQRWEGYLGARADGQKPLFSARRSSILGGAAAGAVVELL 120
Query: 121 XXXXXSFSSTHAAAAELLRVDGSFPRRCCRVVAPKXXXXXXXXXXXXIRRKVDEGARVVM 180
SFSSTHAAAAELLRVDGSFPRRCCRVVAPK IRRKVDEGARVVM
Sbjct: 121 APLPASFSSTHAAAAELLRVDGSFPRRCCRVVAPKAESGGEAAVVAEIRRKVDEGARVVM 180
Query: 181 GRDVFVLRVGAGFDAAFAMAIVLVLDQIAGDEADGNAGEETNRAMIW 227
GRDVFVLRVGAGFDAAFAMAIVLVLDQIAGDEADGNAGEETNRAMIW
Sbjct: 181 GRDVFVLRVGAGFDAAFAMAIVLVLDQIAGDEADGNAGEETNRAMIW 227
>Os05g0510100 Protein of unknown function DUF567 family protein
Length = 237
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 129/231 (55%), Gaps = 19/231 (8%)
Query: 1 MAIVGEEYCSA-EERVLTVRKTSHFSPGDGFAAYDHRTGGLAFRADTYXXXXXXXXXXXX 59
M IVGEE+C E+R LTVRKT+ F PGDG AYDH TG LAFR +TY
Sbjct: 7 MVIVGEEHCGGGEDRELTVRKTTLFCPGDGLEAYDHGTGTLAFRVETYGRGGVCGGGAAA 66
Query: 60 XXXXXXXXXXXXI-TVRRRRPSLHQRWEGYLG-ARADGQKPLFSARRSSIXXXXXXXXXX 117
+ TVRRRRPSLH RW+G+LG A GQKPLFSARRSSI
Sbjct: 67 GDLALLGPEGEPVLTVRRRRPSLHHRWDGFLGDGAASGQKPLFSARRSSILGVGSGAAAV 126
Query: 118 XXXXXXXXSFSSTHAAAAELLRVDGSFPRRCCRVVAPKXXXXXXXXXXXXI--------R 169
AA RVDGSFPRRCCRVVA K R
Sbjct: 127 LVDLLA--------PGAAGEFRVDGSFPRRCCRVVAVKAAAPAGGGGEEEEEEVVVAEVR 178
Query: 170 RKVDEGARVVMGRDVFVLRVGAGFDAAFAMAIVLVLDQIAGDEADGNAGEE 220
RKVDE A VVMGRDVFVL + AGFDAAFAM IVLVLD+I GDE +G+ E+
Sbjct: 179 RKVDEDAHVVMGRDVFVLWLRAGFDAAFAMGIVLVLDRITGDELNGDLSED 229
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,243,775
Number of extensions: 186522
Number of successful extensions: 521
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)