BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0509900 Os05g0509900|AK072992
(259 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0509900 Transcription initiation factor IIF, beta subu... 541 e-154
Os01g0772200 Transcription initiation factor IIF, beta subu... 176 1e-44
>Os05g0509900 Transcription initiation factor IIF, beta subunit family protein
Length = 259
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MGEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVVAKVVLSLDLLRS 60
MGEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVVAKVVLSLDLLRS
Sbjct: 1 MGEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVVAKVVLSLDLLRS 60
Query: 61 EEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPH 120
EEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPH
Sbjct: 61 EEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPH 120
Query: 121 SDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGLIPSGSKEKKKQTPTKP 180
SDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGLIPSGSKEKKKQTPTKP
Sbjct: 121 SDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGLIPSGSKEKKKQTPTKP 180
Query: 181 SDAKRIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKRGPNQ 240
SDAKRIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKRGPNQ
Sbjct: 181 SDAKRIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKRGPNQ 240
Query: 241 GTHELKPEYKKSTGDTDAS 259
GTHELKPEYKKSTGDTDAS
Sbjct: 241 GTHELKPEYKKSTGDTDAS 259
>Os01g0772200 Transcription initiation factor IIF, beta subunit family protein
Length = 138
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/136 (70%), Positives = 105/136 (77%), Gaps = 14/136 (10%)
Query: 1 MGEEAKYLETARAERSVWLMKCPPVVSHAWQ--------------GAVSSSDAAGSNPNP 46
M EEAK LETARA+RSVWLMKCP VVS AWQ A ++ + +NPNP
Sbjct: 1 MAEEAKNLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNP 60
Query: 47 VVAKVVLSLDLLRSEEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLS 106
VVAKV++SLD LRSE+ LQFKMEMAQT GNTPKSYSLNM KDFVPMCVFSESNQGKLS
Sbjct: 61 VVAKVIVSLDPLRSEDQQLQFKMEMAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLS 120
Query: 107 CEGKVEHKFDMKPHSD 122
CEGKV HKFDM+PHSD
Sbjct: 121 CEGKVGHKFDMEPHSD 136
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,200,598
Number of extensions: 376522
Number of successful extensions: 784
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 783
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 160
Effective length of database: 11,866,615
Effective search space: 1898658400
Effective search space used: 1898658400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)