Os05g0509900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription initiation factor IIF, beta subunit family protein.
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Os05g0509900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription initiation factor IIF, beta subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.85 | 0.229 | 9.68 | -0.582 | 1.28 | 0.624 | 0.151 | -0.32 | -0.187 | 6.74 | 26.24 | 1224 | -- | -- |
| 23.87 | 0.228 | 9.67 | -0.501 | 1.28 | 0.589 | 0.152 | -- | -0.167 | 6.73 | 26.36 | 1216 | -- | -- |
| 23.9 | 0.228 | 9.68 | -0.593 | 1.28 | 0.629 | -- | -0.38 | -0.187 | 6.74 | 26.34 | 1225 | -- | -- |
| 23.92 | 0.228 | 9.67 | -0.499 | 1.28 | 0.588 | -- | -- | -0.165 | 6.73 | 26.41 | 1224 | -- | -- |
| 107.67 | 0.483 | 9.67 | -0.359 | -- | 0.563 | -- | 0.546 | -0.104 | -- | 26.48 | 1325 | -- | -- |
| 37.52 | 0.287 | 9.66 | -0.324 | 1.29 | -- | 0.198 | -- | -0.144 | 6.43 | -- | -- | -- | -- |
| 37.61 | 0.287 | 9.66 | -0.322 | 1.3 | -- | -- | -- | -0.145 | 6.43 | -- | -- | -- | -- |
| 107.46 | 0.483 | 9.72 | -0.513 | -- | 0.662 | -- | -- | -0.221 | -- | 24.81 | 1328 | -- | -- |
| 29.82 | 0.254 | 9.64 | -- | 1.29 | 0.47 | -- | -- | -0.052 | 6.67 | 28.42 | 1181 | -- | -- |
| 124.83 | 0.522 | 9.69 | -0.288 | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
| 40.34 | 0.297 | 9.66 | -- | 1.29 | -- | -- | -- | -0.109 | 6.44 | -- | -- | -- | -- |
| 113.87 | 0.497 | 9.69 | -- | -- | 0.539 | -- | -- | -0.12 | -- | 25.41 | 1326 | -- | -- |
| 127.03 | 0.526 | 9.68 | -- | -- | -- | -- | -- | -0.0855 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 3 | 24.72 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 4 | 24.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 14 |
| 5 | 24.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 6 | 24.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 8 | 24.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 18 | 24.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 52 | 24.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 63 | 24.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 66 | 24.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 78 | 24.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 99 | 24.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 115 | 24.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 22 |
| 122 | 24.81 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 141 | 24.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 144 | 24.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 160 | 24.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 300 | 25.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 392 | 25.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 413 | 25.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 416 | 25.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 448 | 25.50 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 449 | 25.50 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 450 | 25.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 459 | 25.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 466 | 25.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 17 |
| 475 | 25.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 479 | 25.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 496 | 25.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 501 | 25.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 527 | 25.53 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 557 | 25.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 590 | 25.56 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 697 | 25.58 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 819 | 25.63 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 914 | 25.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 921 | 25.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |