Os01g0772200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription initiation factor IIF, beta subunit family protein.
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Os01g0772200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription initiation factor IIF, beta subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.16 | 0.15 | 11.3 | -0.0137 | 0.2 | 0.288 | -0.306 | -0.368 | 0.00239 | 6.76 | 25.8 | 169 | -- | -- |
| 10.29 | 0.149 | 11.3 | -0.0628 | 0.181 | 0.311 | -0.37 | -- | -0.00758 | 6.24 | 25.81 | 282 | -- | -- |
| 10.37 | 0.15 | 11.3 | -0.00069 | 0.19 | 0.305 | -- | -0.434 | 0.0125 | 7.1 | 26.11 | 196 | -- | -- |
| 10.64 | 0.152 | 11.3 | -0.0666 | 0.19 | 0.332 | -- | -- | -0.00459 | 7 | 25.7 | 240 | -- | -- |
| 11.73 | 0.16 | 11.3 | 0.034 | -- | 0.43 | -- | -0.623 | 0.0196 | -- | 31.42 | 313 | -- | -- |
| 11.78 | 0.161 | 11.3 | -0.153 | 0.236 | -- | -0.435 | -- | -0.0778 | 5.94 | -- | -- | -- | -- |
| 12.21 | 0.164 | 11.3 | -0.156 | 0.234 | -- | -- | -- | -0.0758 | 6.28 | -- | -- | -- | -- |
| 11.95 | 0.161 | 11.3 | -0.0464 | -- | 0.427 | -- | -- | 0.0181 | -- | 28.5 | 352 | -- | -- |
| 10.75 | 0.153 | 11.3 | -- | 0.183 | 0.356 | -- | -- | 0.00838 | 7.12 | 25.78 | 237 | -- | -- |
| 15.06 | 0.181 | 11.3 | -0.15 | -- | -- | -- | -- | -0.0708 | -- | -- | -- | -- | -- |
| 12.86 | 0.168 | 11.3 | -- | 0.232 | -- | -- | -- | -0.0585 | 6.31 | -- | -- | -- | -- |
| 11.99 | 0.161 | 11.3 | -- | -- | 0.439 | -- | -- | 0.026 | -- | 28.34 | 359 | -- | -- |
| 15.66 | 0.185 | 11.3 | -- | -- | -- | -- | -- | -0.0541 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 10 | 9.68 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 12 | 9.69 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 21 |
| 16 | 9.71 | temperature | 15 | 90 | > th | dose dependent | rect. | 22 | 7 |
| 48 | 9.84 | radiation | 20 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 56 | 9.84 | temperature | 15 | 30 | > th | dose dependent | rect. | 22 | 21 |
| 62 | 9.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 70 | 9.90 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 21 |
| 82 | 9.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 117 | 9.96 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 18 |
| 130 | 9.97 | temperature | 15 | 30 | > th | dose dependent | rect. | 22 | 23 |
| 155 | 10.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 156 | 10.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 162 | 10.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 214 | 10.07 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 215 | 10.07 | temperature | 20 | 90 | > th | dose independent | rect. | 22 | 7 |
| 227 | 10.08 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 270 | 10.11 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 308 | 10.14 | temperature | 20 | 30 | > th | dose independent | rect. | 22 | 21 |
| 312 | 10.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 343 | 10.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 351 | 10.16 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 366 | 10.17 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 21 |
| 370 | 10.17 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 410 | 10.19 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 411 | 10.19 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 5 |
| 414 | 10.19 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 20 |
| 425 | 10.19 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 502 | 10.23 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 532 | 10.24 | temperature | 30 | 30 | < th | dose independent | rect. | 5 | 17 |
| 556 | 10.25 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 573 | 10.25 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 10 |
| 588 | 10.26 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 605 | 10.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 606 | 10.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 611 | 10.27 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 11 |
| 639 | 10.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 650 | 10.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 675 | 10.29 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 707 | 10.30 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 12 |
| 753 | 10.31 | humidity | 80 | 90 | > th | dose independent | rect. | 22 | 7 |
| 792 | 10.32 | humidity | 80 | 270 | > th | dose independent | rect. | 22 | 5 |
| 835 | 10.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 837 | 10.33 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 8 |
| 839 | 10.33 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 12 |
| 851 | 10.33 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 859 | 10.33 | temperature | 15 | 30 | > th | dose dependent | rect. | 24 | 19 |
| 871 | 10.33 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 872 | 10.33 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 877 | 10.33 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 904 | 10.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 954 | 10.36 | temperature | 10 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 957 | 10.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 961 | 10.36 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 970 | 10.36 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 971 | 10.36 | atmosphere | 1015 | 90 | < th | dose independent | rect. | 22 | 7 |
| 984 | 10.36 | temperature | 10 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 987 | 10.36 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 19 |
| 999 | 10.36 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 5 | 2 |