BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0772200 Os01g0772200|AK060471
         (138 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75510.1  | chr1:28347254-28348629 REVERSE LENGTH=262          109   4e-25
AT3G52270.1  | chr3:19387180-19388902 REVERSE LENGTH=270          103   4e-23

>AT1G75510.1 | chr1:28347254-28348629 REVERSE LENGTH=262
          Length = 261

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 13/134 (9%)

Query: 3   EEAKNLETARADRSVWLMKCPTVVSRAWQEXXXXXXXXXXXXXXXXXXXXXXXXXPNPVV 62
           E+  NL+  ++DRS+WLMKCP VV +AW +                           P +
Sbjct: 2   EDIHNLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSP------------PDM 49

Query: 63  AKVIVSLDPLRSEDQQLQFKMEMAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCE 122
           AK++  +DPLR +D   +FKM M     GN PK Y+LNMF DFVPM  FS+ NQG  + E
Sbjct: 50  AKIVREVDPLR-DDSPPEFKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAE 108

Query: 123 GKVGHKFDMEPHSD 136
           GKV HKFDM+P+ +
Sbjct: 109 GKVDHKFDMKPYGE 122



>AT3G52270.1 | chr3:19387180-19388902 REVERSE LENGTH=270
          Length = 269

 Score =  103 bits (256), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 13/133 (9%)

Query: 4   EAKNLETARADRSVWLMKCPTVVSRAWQEXXXXXXXXXXXXXXXXXXXXXXXXXPNPVVA 63
           E + LET  A+RS+ LMK P++V+ + Q                               A
Sbjct: 19  ENEALETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYR-------------PDA 65

Query: 64  KVIVSLDPLRSEDQQLQFKMEMAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEG 123
           KVI+ +DPL  ED+  QF ME+A+  +GN P+ Y+L+M KDF+PM VF ES+ GK+S EG
Sbjct: 66  KVILGVDPLAHEDEGTQFVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEG 125

Query: 124 KVGHKFDMEPHSD 136
           K+ +KFDM PH++
Sbjct: 126 KIKNKFDMRPHNE 138



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.128    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,586,225
Number of extensions: 82901
Number of successful extensions: 96
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)