BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0508800 Os05g0508800|AK065638
         (480 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0508800  Conserved hypothetical protein                      946   0.0  
Os01g0774500  Conserved hypothetical protein                      636   0.0  
Os03g0628800  Conserved hypothetical protein                      567   e-162

>Os05g0508800 Conserved hypothetical protein
          Length = 480

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/480 (95%), Positives = 457/480 (95%)

Query: 1   MREYGPAAAPRLLVSDSGRVHEMERFSHYVARQIGFDHVDECPHLCTLAYDYLRKNKGYE 60
           MREYGPAAAPRLLVSDSGRVHEMERFSHYVARQIGFDHVDECPHLCTLAYDYLRKNKGYE
Sbjct: 1   MREYGPAAAPRLLVSDSGRVHEMERFSHYVARQIGFDHVDECPHLCTLAYDYLRKNKGYE 60

Query: 61  ENIFAFFQNSQDPETLIVKFIEELDKCILGYFSFHWNYATYIISQVLTVEGAPKRKLRNM 120
           ENIFAFFQNSQDPETLIVKFIEELDKCILGYFSFHWNYATYIISQVLTVEGAPKRKLRNM
Sbjct: 61  ENIFAFFQNSQDPETLIVKFIEELDKCILGYFSFHWNYATYIISQVLTVEGAPKRKLRNM 120

Query: 121 VLEATRKQRFERVTRNLKVTRLFSTLVEELKAIGLSSHVEAPRSDVMVPAAHCDRSPVXX 180
           VLEATRKQRFERVTRNLKVTRLFSTLVEELKAIGLSSHVEAPRSDVMVPAAHCDRSPV  
Sbjct: 121 VLEATRKQRFERVTRNLKVTRLFSTLVEELKAIGLSSHVEAPRSDVMVPAAHCDRSPVLL 180

Query: 181 XXXXXXXXXKSTVLKDILKEAFWSGXXXXXXXXXXXXFKETDVIYRAISSRGHHNDMLQT 240
                    KSTVLKDILKEAFWSG            FKETDVIYRAISSRGHHNDMLQT
Sbjct: 181 LMGGGMGAGKSTVLKDILKEAFWSGAAANAVVVEADAFKETDVIYRAISSRGHHNDMLQT 240

Query: 241 AELVHQSSMDAASSLLVTALNEGRDVIMDGTMSWEPFVQQTITMARAVHRQRYRMGVGYK 300
           AELVHQSSMDAASSLLVTALNEGRDVIMDGTMSWEPFVQQTITMARAVHRQRYRMGVGYK
Sbjct: 241 AELVHQSSMDAASSLLVTALNEGRDVIMDGTMSWEPFVQQTITMARAVHRQRYRMGVGYK 300

Query: 301 VTEDGSITEEYWEPVEDSSTDEEGETRNRKPYRIELVGVVCDAYLAVVRGIRRAVITGRA 360
           VTEDGSITEEYWEPVEDSSTDEEGETRNRKPYRIELVGVVCDAYLAVVRGIRRAVITGRA
Sbjct: 301 VTEDGSITEEYWEPVEDSSTDEEGETRNRKPYRIELVGVVCDAYLAVVRGIRRAVITGRA 360

Query: 361 VRVKSQLKSHKRFATAFHSYCNLVDNARLYCTNSTGAAKLIGWKDGESNLLVDPEEIGCL 420
           VRVKSQLKSHKRFATAFHSYCNLVDNARLYCTNSTGAAKLIGWKDGESNLLVDPEEIGCL
Sbjct: 361 VRVKSQLKSHKRFATAFHSYCNLVDNARLYCTNSTGAAKLIGWKDGESNLLVDPEEIGCL 420

Query: 421 ERVSHLNDEADCVHEIYPDGSAAAAWEALVTSPSRAPAQREIMAAVQRSEARFRTTSTPS 480
           ERVSHLNDEADCVHEIYPDGSAAAAWEALVTSPSRAPAQREIMAAVQRSEARFRTTSTPS
Sbjct: 421 ERVSHLNDEADCVHEIYPDGSAAAAWEALVTSPSRAPAQREIMAAVQRSEARFRTTSTPS 480



>Os01g0774500 Conserved hypothetical protein
          Length = 509

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/474 (66%), Positives = 364/474 (76%), Gaps = 13/474 (2%)

Query: 7   AAAPRLLVSDSGRVHEMERFSHYVARQIGFDHVDECPHLCTLAYDYLRKNKGYEENIFAF 66
           AA PRL V  +GRVHE+ERFSHYVA+QIG + V ECPHLC LAY YL+K +GYE+N+ AF
Sbjct: 39  AAVPRLAVYGAGRVHEIERFSHYVAKQIGIEDVSECPHLCALAYGYLKKTEGYEQNLLAF 98

Query: 67  FQNSQDPETLIVKFIEELDKCILGYFSFHWNYATYIISQVLTVEGAPKRKLRNMVLEATR 126
           F N  + + L+V  IEELDKCILGYFSFHW +AT +I+QVLT E  P+RKL+ MVLEATR
Sbjct: 99  FHNKINSDALLVLLIEELDKCILGYFSFHWKFATEVITQVLTAE-QPRRKLKTMVLEATR 157

Query: 127 KQRFERVTRNLKVTRLFSTLVEELKAIGLS---SHVEAPRSDVMVPAAHCDRSPVXXXXX 183
           K RFERV+R LKVTRLFSTLVEELK IG++     +    +DVMVPAAH DRSPV     
Sbjct: 158 KMRFERVSRKLKVTRLFSTLVEELKVIGVTCNDGQLRDADADVMVPAAHRDRSPVLLLMG 217

Query: 184 XXXXXXKSTVLKDILKEAFWSGXXXXXXXXXXXXFKETDVIYRAISSRGHHNDMLQTAEL 243
                 KSTVLK I+K  FWSG            FKE+DVIY+AISSRGHHNDMLQTAEL
Sbjct: 218 GGMGAGKSTVLKQIMKGLFWSGAAAHAVVVEADAFKESDVIYQAISSRGHHNDMLQTAEL 277

Query: 244 VHQSSMDAASSLLVTALNEGRDVIMDGTMSWEPFVQQTITMARAVHRQRYRMGVGYKVTE 303
           VHQSS+DAA+SLLVTALNEGRDVIMDGT+SWEPFV QTI MAR+VHRQRYRMGVGYKV  
Sbjct: 278 VHQSSIDAAASLLVTALNEGRDVIMDGTLSWEPFVLQTIAMARSVHRQRYRMGVGYKVAA 337

Query: 304 DGSITEEYWEPVEDSSTDEEGETRNRKPYRIELVGVVCDAYLAVVRGIRRAVITGRAVRV 363
           DG+ TE+YWEPVE +          R+PYRIELVG++CDAYLAVVRGIRRA+I+GRAVRV
Sbjct: 338 DGNATEQYWEPVEGAPVPS-----GRRPYRIELVGIICDAYLAVVRGIRRAIISGRAVRV 392

Query: 364 KSQLKSHKRFATAFHSYCNLVDNARLYCTNSTGAAKLIGWKDGESNLLVDPEEIGCLERV 423
            SQLKSHKRFA +F  YC+LVD+A LY TN+   AKLIGWKD  S LLVD EEIG L+RV
Sbjct: 393 SSQLKSHKRFAGSFRKYCDLVDSASLYSTNTIAGAKLIGWKDVGSRLLVDVEEIGLLDRV 452

Query: 424 SHLNDEADCVHEIYPDG----SAAAAWEALVTSPSRAPAQREIMAAVQRSEARF 473
           S +N+EA+ VHE+YPDG     A + WE LV+SP+RA  QRE+  A+  SEA F
Sbjct: 453 SRINEEANGVHELYPDGHPTDGAGSVWEDLVSSPARAAIQRELREAILDSEACF 506



>Os03g0628800 Conserved hypothetical protein
          Length = 548

 Score =  567 bits (1462), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 290/476 (60%), Positives = 345/476 (72%), Gaps = 18/476 (3%)

Query: 10  PRLLVSDSGRVHEMERFSHYVARQIGFDHVDECPHLCTLAYDYLRKNKGYEENIFAFFQN 69
           PRL++++SGRV  +E+FSHYVARQ+GF  ++ECP LC LA +YL++ K   ++I  FF N
Sbjct: 67  PRLVMAESGRVEHIEKFSHYVARQMGFQDINECPQLCKLANNYLKRTKNCMDDIDDFFAN 126

Query: 70  SQDPETLIVKFIEELDKCILGYFSFHWNYATYIISQVLTVE--GAPKRKLRNMVLEATRK 127
             D E+L VKFIEELDKCILGYF+FHW++AT +ISQ LTV+   A K+KLRN+VLEATRK
Sbjct: 127 ILDSESLYVKFIEELDKCILGYFAFHWDHATALISQALTVDCGTASKKKLRNLVLEATRK 186

Query: 128 QRFERVTRNLKVTRLFSTLVEELKAIGLSSHV------EAPR-SDVMVPAAHCDRSPVXX 180
           QRFERVTR+LKVTR+FSTLVEE+KAIG+ +        E P  +DVM P AH +RSPV  
Sbjct: 187 QRFERVTRDLKVTRVFSTLVEEMKAIGVPTAAMNGDGEEEPHCTDVMAPVAHDERSPVLL 246

Query: 181 XXXXXXXXXKSTVLKDILKEAFWSGXXXXXXXXXXXXFKETDVIYRAISSRGHHNDMLQT 240
                    KSTVLK+IL+E  WS             FKETDVIYRAISS GHHNDMLQT
Sbjct: 247 LMGGGMGAGKSTVLKEILQEPLWSKDEANAVVVEADAFKETDVIYRAISSMGHHNDMLQT 306

Query: 241 AELVHQSSMDAASSLLVTALNEGRDVIMDGTMSWEPFVQQTITMARAVHRQRYRMGVGYK 300
           AELVHQSS DAASSLLVTALNEGRDVI+DGT+SWEPFVQQTI MAR VHR+RYRMG GYK
Sbjct: 307 AELVHQSSTDAASSLLVTALNEGRDVILDGTLSWEPFVQQTIAMARDVHRRRYRMGPGYK 366

Query: 301 VTED-GSITEEYWEPVEDSSTDEEGETRNRKPYRIELVGVVCDAYLAVVRGIRRAVITGR 359
           V  D G ITE YWEP +    D       RKPYRIE+ GVVCDAYLAV RGIRRA++TGR
Sbjct: 367 VDPDTGDITENYWEPAD---ADAASPPPTRKPYRIEVAGVVCDAYLAVARGIRRAIVTGR 423

Query: 360 AVRVKSQLKSHKRFATAFHSYCNLVDNARLYCTNSTGAAKLIGWKDG-ESNLLVDPEEIG 418
           AVRV+SQL SH+RFA AF  Y   VD ARLY TN+ GAA+LI  KDG   +LLV+P E  
Sbjct: 424 AVRVRSQLVSHRRFAAAFRRYAGAVDGARLYSTNTMGAARLIARKDGVAGSLLVEPAEFA 483

Query: 419 CLERVSHLNDEADCVHEIYPDGSAAAA----WEALVTSPSRAPAQREIMAAVQRSE 470
           CL+ V  LN+ A  VH++Y  G+ A      W+ ++ SP+RA  QRE+  A +  E
Sbjct: 484 CLDAVGGLNENATGVHDLYRGGATACGARSIWDDMIASPARADIQRELREAFRSVE 539



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,996,964
Number of extensions: 580806
Number of successful extensions: 1568
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1558
Number of HSP's successfully gapped: 3
Length of query: 480
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 375
Effective length of database: 11,553,331
Effective search space: 4332499125
Effective search space used: 4332499125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)