Os03g0628800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0628800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 171.03 | 0.614 | 10.3 | -1.58 | 2.12 | -2.06 | -0.943 | -0.491 | 0.191 | 20 | 15.3 | 6 | -- | -- |
| 171.03 | 0.609 | 10.3 | -1.53 | 2.11 | -2.06 | -0.902 | -- | 0.194 | 20 | 15.18 | 3 | -- | -- |
| 173.31 | 0.613 | 10.3 | -1.51 | 2.11 | -2.06 | -- | -0.21 | 0.199 | 20.1 | 15.09 | 3 | -- | -- |
| 173.31 | 0.613 | 10.2 | -1.48 | 2.11 | -2.06 | -- | -- | 0.207 | 20.1 | 15.27 | 2 | -- | -- |
| 416.53 | 0.951 | 10.2 | -1.42 | -- | -2.22 | -- | 0.404 | 0.209 | -- | 12.18 | 2 | -- | -- |
| 216.3 | 0.689 | 10.3 | -1.91 | 2.16 | -- | -0.514 | -- | -0.0938 | 21.1 | -- | -- | -- | -- |
| 217.19 | 0.69 | 10.3 | -1.9 | 2.16 | -- | -- | -- | -0.094 | 21.2 | -- | -- | -- | -- |
| 416.62 | 0.951 | 10.2 | -1.49 | -- | -2.22 | -- | -- | 0.193 | -- | 13.44 | 2 | -- | -- |
| 225.87 | 0.7 | 10.2 | -- | 2.14 | -2.79 | -- | -- | 0.454 | 19.7 | 14.67 | 3 | -- | -- |
| 487.94 | 1.03 | 10.3 | -1.89 | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
| 311.97 | 0.826 | 10.3 | -- | 2.16 | -- | -- | -- | 0.117 | 21.1 | -- | -- | -- | -- |
| 471.54 | 1.01 | 10.1 | -- | -- | -2.69 | -- | -- | 0.411 | -- | 13.29 | 2 | -- | -- |
| 582.12 | 1.13 | 10.2 | -- | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 24 | 166.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 32 | 167.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 34 | 167.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 41 | 168.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 54 | 169.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 65 | 170.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 67 | 170.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 21 |
| 94 | 171.47 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 113 | 172.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 123 | 172.86 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 147 | 173.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 148 | 173.55 | humidity | 70 | 30 | > th | dose independent | rect. | 23 | 18 |
| 151 | 173.63 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 159 | 173.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 23 |
| 160 | 173.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 177 | 174.19 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 181 | 174.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 187 | 174.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 230 | 174.98 | temperature | 15 | 10 | > th | dose dependent | sin | 2 | NA |
| 240 | 175.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 291 | 175.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 303 | 176.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 339 | 176.46 | radiation | 20 | 270 | < th | dose dependent | rect. | 20 | 21 |
| 342 | 176.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 395 | 177.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 438 | 177.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 465 | 178.20 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 19 |
| 492 | 178.47 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 14 |
| 501 | 178.58 | humidity | 70 | 10 | > th | dose independent | rect. | 23 | 21 |
| 512 | 178.72 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 11 |
| 517 | 178.77 | humidity | 60 | 30 | > th | dose dependent | rect. | 23 | 18 |
| 522 | 178.83 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 16 |
| 526 | 178.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 543 | 179.19 | temperature | 30 | 30 | < th | dose independent | rect. | 23 | 19 |
| 547 | 179.23 | humidity | 60 | 90 | > th | dose dependent | rect. | 11 | 6 |
| 554 | 179.30 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 14 |
| 571 | 179.48 | wind | 1 | 720 | > th | dose independent | rect. | 3 | 6 |
| 593 | 179.66 | wind | 1 | 720 | > th | dose independent | rect. | 3 | 22 |
| 608 | 179.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 696 | 180.65 | humidity | 50 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 699 | 180.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 716 | 180.81 | wind | 1 | 720 | > th | dose independent | rect. | 3 | 14 |
| 735 | 180.93 | radiation | 40 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 738 | 180.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 740 | 180.97 | wind | 1 | 720 | > th | dose independent | rect. | 4 | 10 |
| 816 | 181.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 873 | 181.82 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 993 | 182.47 | radiation | 30 | 720 | < th | dose independent | rect. | 3 | 7 |