BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0628800 Os03g0628800|AK099948
(548 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30630.2 | chr2:13046883-13049106 REVERSE LENGTH=553 494 e-140
AT1G04280.1 | chr1:1143643-1146541 REVERSE LENGTH=535 489 e-138
AT1G06750.2 | chr1:2073882-2076350 FORWARD LENGTH=527 488 e-138
>AT2G30630.2 | chr2:13046883-13049106 REVERSE LENGTH=553
Length = 552
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/499 (52%), Positives = 334/499 (66%), Gaps = 35/499 (7%)
Query: 64 REMPRLVMAESGR-VEHIEKFSHYVARQMGFQDINECPQLCKLANNYLKRTKNCMDDIDD 122
+ +PRL ++ + E +E+FSHYV RQMGF+D ECP LCKLAN Y++++ +C +DI
Sbjct: 55 KNIPRLRSSQKHKGHEKLERFSHYVVRQMGFKDRRECPHLCKLANEYIRKSGSCEEDIYS 114
Query: 123 FFANILDSESLYVKFIEELDKCILGYFAFHWDHATALISQ-----ALTVDCGTAS----- 172
FF+ ++SL++K +EE ++CIL YFA+HW HA +ISQ +L++ C +
Sbjct: 115 FFSEEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQVTNKLSLSLLCYITNRPKTF 174
Query: 173 ---------KKKLRNLVLEATRKQRFERVTRDLKVTRVFSTLVEEMKAIGVPTAAMNGDG 223
KKKL+++V+ ATR+QRFERVT++LKV RVF+TLVEEMKA+G+ +
Sbjct: 175 QILSADVEPKKKLKHIVMAATREQRFERVTKNLKVARVFNTLVEEMKAMGIASV------ 228
Query: 224 EEEPHCTDVMAPVAHDERSPVXXXXXXXXXXXKSTVLKEILQEPLWSKXXXXXXXXXXXX 283
++ CT+VMAPVAH +RSPV KSTVLK+IL+EP W+
Sbjct: 229 -DDSECTEVMAPVAHKDRSPVLLLMGGGMGAGKSTVLKDILKEPFWA--GADAVVIEADA 285
Query: 284 FKETDVIYRAISSMGHHNDMLQTAELVHQSSTDAASSLLVTALNEGRDVILDGTLSWEPF 343
FKE+DVIYRA+S+ GH DM++TAE VHQSSTDAASSLLVTALNEGRDVI+DGTLSW PF
Sbjct: 286 FKESDVIYRALSARGH-VDMIKTAEFVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPF 344
Query: 344 VQQTIAMARDVHRRRYRMGPGYKVDPDTGDITENYWEXXXXXXXXXX--XTRKPYRIEVA 401
V QTI MAR+VHR RYRMG GYKV + GD+ ENYWE RKPYRIE+
Sbjct: 345 VVQTITMARNVHRHRYRMGAGYKVG-ENGDVIENYWERIGERQQLQEDGRERKPYRIELV 403
Query: 402 GVVCDAYLAVARGIRRAIVTGRAVRVRSQLVSHXXXXXXXXXXXGAVDGARLYSTNTM-G 460
GVVCDAYLAV RGIRRAI+ RAVRVRSQL SH VD ARLY TN + G
Sbjct: 404 GVVCDAYLAVIRGIRRAIMCRRAVRVRSQLRSHKRFANAFLTYCNLVDNARLYCTNALEG 463
Query: 461 AARLIARKDGVAGSLLVEPAEFACLDAVGGLNENATGVHDLYRGGATACGARSIWDDMIA 520
+ +LI K+ +LLV+P E CL VG LNENA +++LYR AC A SIW D++
Sbjct: 464 SPKLIGWKEK-EKTLLVDPEEIDCLKNVGRLNENADSIYELYRNPNPACEAGSIWKDIVL 522
Query: 521 SPARADIQRELREAFRSVE 539
SP+R +IQ+EL+ + + VE
Sbjct: 523 SPSRFNIQQELKYSIQKVE 541
>AT1G04280.1 | chr1:1143643-1146541 REVERSE LENGTH=535
Length = 534
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/481 (52%), Positives = 318/481 (66%), Gaps = 12/481 (2%)
Query: 67 PRLVMAESGRVEHIEKFSHYVARQMGFQDINECPQLCKLANNYLKRTKNCMDDIDDFFAN 126
P + +SGR ++E+FSHYVARQ+GF+D NE PQLCKLAN YL +TK +++D++ N
Sbjct: 64 PLIERKDSGRRSNLERFSHYVARQLGFEDPNEYPQLCKLANGYLLKTKGYDENVDEYLEN 123
Query: 127 ILDSESLYVKFIEELDKCILGYFAFHWDHATALISQALTVDCGTASKKKLRNLVLEATRK 186
+ +SLYV +EE D+CIL YF+F+W ++ LISQAL+ D KL++ V+ ATRK
Sbjct: 124 EAERDSLYVHLLEEFDRCILTYFSFNWTQSSNLISQALS-DESDQKVPKLKDFVMAATRK 182
Query: 187 QRFERVTRDLKVTRVFSTLVEEMKAIGVPTAAMNGDGEEEPHCTDVMAPVAHDERSPVXX 246
QRFERVT+DLKV RV STLVEEM+ IG G EPHCT+VM+PVAH++RSPV
Sbjct: 183 QRFERVTKDLKVKRVISTLVEEMRVIG--------SGSSEPHCTEVMSPVAHNKRSPVLL 234
Query: 247 XXXXXXXXXKSTVLKEILQEPLWSKXXXXXXXXXXXXFKETDVIYRAISSMGHHNDMLQT 306
KSTVLK+I E WS+ FKETDVIYRA+SS GHH+DMLQT
Sbjct: 235 LMGGGMGAGKSTVLKDIFLESFWSEAQADAVVIEADAFKETDVIYRALSSRGHHDDMLQT 294
Query: 307 AELVHQSSTDAASSLLVTALNEGRDVILDGTLSWEPFVQQTIAMARDVHRRRYRMGPGYK 366
AELVHQSSTDAASSLLVTALN+GRDVI+DGTLSWEPFV+Q I MAR+VH+++YRMG GYK
Sbjct: 295 AELVHQSSTDAASSLLVTALNDGRDVIMDGTLSWEPFVEQMIEMARNVHKQKYRMGEGYK 354
Query: 367 VDPD-TGDITENYWEXXXXXXXXXXXTRKPYRIEVAGVVCDAYLAVARGIRRAIVTGRAV 425
V + T E KPYRIE+ GVVCDAYLAVARGIRRA++ RAV
Sbjct: 355 VSEEGTITEKYWEEEEEETKENGKQQNLKPYRIELVGVVCDAYLAVARGIRRALMVKRAV 414
Query: 426 RVRSQLVSHXXXXXXXXXXXGAVDGARLYSTNTMGA-ARLIARKDGVAGSLLVEPAEFAC 484
RV+ QL SH VD ARLY TN +G RLIA KDG LLV+P + C
Sbjct: 415 RVKPQLNSHKRFANAFPKYCELVDNARLYCTNAVGGPPRLIAWKDG-NSKLLVDPEDIDC 473
Query: 485 LDAVGGLNENATGVHDLYRGGATACGARSIWDDMIASPARADIQRELREAFRSVEHAPPN 544
L V LN +A +++LY + S+W+D++ P+R +Q+EL +A R +E A P
Sbjct: 474 LKRVSSLNPDAESIYELYPDPSQLSKPGSVWNDVVLVPSRPKVQKELSDAIRRIEKAQPK 533
Query: 545 T 545
Sbjct: 534 N 534
>AT1G06750.2 | chr1:2073882-2076350 FORWARD LENGTH=527
Length = 526
Score = 488 bits (1256), Expect = e-138, Method: Compositional matrix adjust.
Identities = 258/478 (53%), Positives = 324/478 (67%), Gaps = 18/478 (3%)
Query: 66 MPRLVMAESGR-VEHIEKFSHYVARQMGFQDINECPQLCKLANNYLKRTKNCMDDIDDFF 124
+PRL + + E +E+FSHYVARQMGF+D ECP LCKLA Y+ +++ C +DI FF
Sbjct: 50 IPRLKSSHKHKGHEKLERFSHYVARQMGFKDRRECPNLCKLAAEYISKSECCEEDIYSFF 109
Query: 125 ANILDSESLYVKFIEELDKCILGYFAFHWDHATALISQALTVDCGTASKKKLRNLVLEAT 184
+ D+++L++K +EE ++CIL YFAFHW HA +I+Q L+ D K+KL+ +V+ AT
Sbjct: 110 SEEPDADTLFIKLVEEFERCILSYFAFHWSHADLMITQVLSAD--AEPKRKLKQIVMAAT 167
Query: 185 RKQRFERVTRDLKVTRVFSTLVEEMKAIGVPTAAMNGDGEEEPHCTDVMAPVAHDERSPV 244
R+ R +RVT++LKV RVF+TLVEEM+A+G+ + ++ CT+VMAPVAH +RSPV
Sbjct: 168 RELRIKRVTKNLKVARVFNTLVEEMRAMGLASV-------DDSQCTEVMAPVAHKDRSPV 220
Query: 245 XXXXXXXXXXXKSTVLKEILQEPLWSKXXXXXXXXXXXXFKETDVIYRAISSMGHHNDML 304
KSTVLK+IL+E W+ FKE+DVIYRA+SS GH DM+
Sbjct: 221 LLLMGGGMGAGKSTVLKDILKEAFWA--GADSVVIEADAFKESDVIYRALSSRGH-VDMI 277
Query: 305 QTAELVHQSSTDAASSLLVTALNEGRDVILDGTLSWEPFVQQTIAMARDVHRRRYRMGPG 364
QTAELVHQSSTDAASSLLVTALNEGRDVI+DGTLSW PFV QTI MAR+VHR YRMG G
Sbjct: 278 QTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHHYRMGAG 337
Query: 365 YKVDPDTGDITENYWEXXXXXXXXXX--XTRKPYRIEVAGVVCDAYLAVARGIRRAIVTG 422
YKV D G ITENYWE RKPYRIE+ GVVCDAYLAV RGIRRAI+
Sbjct: 338 YKVGDD-GVITENYWERIGERQQIQEDGRRRKPYRIELVGVVCDAYLAVIRGIRRAIMCR 396
Query: 423 RAVRVRSQLVSHXXXXXXXXXXXGAVDGARLYSTNTM-GAARLIARKDGVAGSLLVEPAE 481
RAVRVRSQL SH VD ARLY TN + G+ +LI K+ +LLV+ E
Sbjct: 397 RAVRVRSQLRSHKRFAEAFPTYCSLVDNARLYCTNALEGSPKLIGWKEK-EKTLLVDTEE 455
Query: 482 FACLDAVGGLNENATGVHDLYRGGATACGARSIWDDMIASPARADIQRELREAFRSVE 539
CL VGGLNENA +++LYR AC A SIW D++ SP+R IQ+EL+ + + VE
Sbjct: 456 IDCLKRVGGLNENAGSIYELYRQPNPACEAGSIWKDIVLSPSRFSIQQELKYSIQKVE 513
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,458,952
Number of extensions: 332788
Number of successful extensions: 719
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 3
Length of query: 548
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 445
Effective length of database: 8,282,721
Effective search space: 3685810845
Effective search space used: 3685810845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)