Os05g0508800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0508800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.5 | 0.259 | 12 | 0.243 | 0.999 | -1.1 | -0.0438 | 0.198 | 0.327 | 7.62 | 21.52 | 4684 | -- | -- |
| 30.53 | 0.257 | 12 | 0.192 | 0.999 | -1.09 | -0.052 | -- | 0.317 | 7.62 | 21.38 | 4692 | -- | -- |
| 30.49 | 0.257 | 12 | 0.267 | 0.998 | -1.09 | -- | 0.347 | 0.324 | 7.62 | 21.93 | 4686 | -- | -- |
| 30.29 | 0.256 | 12 | 0.168 | 1.02 | -1.01 | -- | -- | 0.351 | 7.65 | 22.19 | 6028 | -- | -- |
| 80.22 | 0.417 | 12 | 0.499 | -- | -1.32 | -- | 1.3 | 0.37 | -- | 23.14 | 3564 | -- | -- |
| 66.16 | 0.381 | 12 | -0.286 | 1.02 | -- | -0.0282 | -- | 0.103 | 7.74 | -- | -- | -- | -- |
| 66.16 | 0.381 | 12 | -0.287 | 1.02 | -- | -- | -- | 0.103 | 7.74 | -- | -- | -- | -- |
| 81.04 | 0.419 | 12 | 0.00761 | -- | -1.04 | -- | -- | 0.342 | -- | 24.1 | 6403 | -- | -- |
| 30.86 | 0.259 | 12 | -- | 1.01 | -0.954 | -- | -- | 0.303 | 7.65 | 22.8 | 6028 | -- | -- |
| 122.79 | 0.518 | 12 | -0.274 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 68.33 | 0.387 | 12 | -- | 1.02 | -- | -- | -- | 0.135 | 7.76 | -- | -- | -- | -- |
| 80.46 | 0.418 | 12 | -- | -- | -0.999 | -- | -- | 0.272 | -- | 25.5 | 6408 | -- | -- |
| 124.77 | 0.521 | 12 | -- | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 3 | 30.78 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 7 | 30.85 | temperature | 20 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 22 | 30.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 29 | 31.06 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 19 |
| 36 | 31.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 19 |
| 86 | 31.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 22 |
| 130 | 31.26 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 136 | 31.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 156 | 31.30 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 180 | 31.35 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 199 | 31.38 | temperature | 20 | 4320 | > th | dose dependent | sin | 5 | NA |
| 212 | 31.41 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 213 | 31.41 | temperature | 20 | 4320 | > th | dose dependent | sin | 18 | NA |
| 245 | 31.46 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 273 | 31.49 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 304 | 31.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 12 |
| 316 | 31.55 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 536 | 31.88 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 807 | 32.15 | temperature | 25 | 14400 | < th | dose independent | sin | 15 | NA |
| 962 | 32.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |