BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0508800 Os05g0508800|AK065638
(480 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06750.2 | chr1:2073882-2076350 FORWARD LENGTH=527 552 e-157
AT2G30630.2 | chr2:13046883-13049106 REVERSE LENGTH=553 542 e-154
AT1G04280.1 | chr1:1143643-1146541 REVERSE LENGTH=535 530 e-151
>AT1G06750.2 | chr1:2073882-2076350 FORWARD LENGTH=527
Length = 526
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/470 (59%), Positives = 348/470 (74%), Gaps = 12/470 (2%)
Query: 10 PRLLVSDSGRVHE-MERFSHYVARQIGFDHVDECPHLCTLAYDYLRKNKGYEENIFAFFQ 68
PRL S + HE +ERFSHYVARQ+GF ECP+LC LA +Y+ K++ EE+I++FF
Sbjct: 51 PRLKSSHKHKGHEKLERFSHYVARQMGFKDRRECPNLCKLAAEYISKSECCEEDIYSFFS 110
Query: 69 NSQDPETLIVKFIEELDKCILGYFSFHWNYATYIISQVLTVEGAPKRKLRNMVLEATRKQ 128
D +TL +K +EE ++CIL YF+FHW++A +I+QVL+ + PKRKL+ +V+ ATR+
Sbjct: 111 EEPDADTLFIKLVEEFERCILSYFAFHWSHADLMITQVLSADAEPKRKLKQIVMAATREL 170
Query: 129 RFERVTRNLKVTRLFSTLVEELKAIGLSSHVEAPRSDVMVPAAHCDRSPVXXXXXXXXXX 188
R +RVT+NLKV R+F+TLVEE++A+GL+S ++ ++VM P AH DRSPV
Sbjct: 171 RIKRVTKNLKVARVFNTLVEEMRAMGLASVDDSQCTEVMAPVAHKDRSPVLLLMGGGMGA 230
Query: 189 XKSTVLKDILKEAFWSGXXXXXXXXXXXXFKETDVIYRAISSRGHHNDMLQTAELVHQSS 248
KSTVLKDILKEAFW+G FKE+DVIYRA+SSRG H DM+QTAELVHQSS
Sbjct: 231 GKSTVLKDILKEAFWAG--ADSVVIEADAFKESDVIYRALSSRG-HVDMIQTAELVHQSS 287
Query: 249 MDAASSLLVTALNEGRDVIMDGTMSWEPFVQQTITMARAVHRQRYRMGVGYKVTEDGSIT 308
DAASSLLVTALNEGRDVIMDGT+SW PFV QTITMAR VHR YRMG GYKV +DG IT
Sbjct: 288 TDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHHYRMGAGYKVGDDGVIT 347
Query: 309 EEYWEPV-EDSSTDEEGETRNRKPYRIELVGVVCDAYLAVVRGIRRAVITGRAVRVKSQL 367
E YWE + E E+G R RKPYRIELVGVVCDAYLAV+RGIRRA++ RAVRV+SQL
Sbjct: 348 ENYWERIGERQQIQEDG--RRRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVRSQL 405
Query: 368 KSHKRFATAFHSYCNLVDNARLYCTNST-GAAKLIGWKDGESNLLVDPEEIGCLERVSHL 426
+SHKRFA AF +YC+LVDNARLYCTN+ G+ KLIGWK+ E LLVD EEI CL+RV L
Sbjct: 406 RSHKRFAEAFPTYCSLVDNARLYCTNALEGSPKLIGWKEKEKTLLVDTEEIDCLKRVGGL 465
Query: 427 NDEADCVHEIY----PDGSAAAAWEALVTSPSRAPAQREIMAAVQRSEAR 472
N+ A ++E+Y P A + W+ +V SPSR Q+E+ ++Q+ E R
Sbjct: 466 NENAGSIYELYRQPNPACEAGSIWKDIVLSPSRFSIQQELKYSIQKVEKR 515
>AT2G30630.2 | chr2:13046883-13049106 REVERSE LENGTH=553
Length = 552
Score = 542 bits (1397), Expect = e-154, Method: Compositional matrix adjust.
Identities = 277/493 (56%), Positives = 350/493 (70%), Gaps = 34/493 (6%)
Query: 10 PRLLVSDSGRVHE-MERFSHYVARQIGFDHVDECPHLCTLAYDYLRKNKGYEENIFAFFQ 68
PRL S + HE +ERFSHYV RQ+GF ECPHLC LA +Y+RK+ EE+I++FF
Sbjct: 58 PRLRSSQKHKGHEKLERFSHYVVRQMGFKDRRECPHLCKLANEYIRKSGSCEEDIYSFFS 117
Query: 69 NSQDPETLIVKFIEELDKCILGYFSFHWNYATYIISQV---------------------L 107
++L +K +EE ++CIL YF++HW++A +ISQV L
Sbjct: 118 EEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQVTNKLSLSLLCYITNRPKTFQIL 177
Query: 108 TVEGAPKRKLRNMVLEATRKQRFERVTRNLKVTRLFSTLVEELKAIGLSSHVEAPRSDVM 167
+ + PK+KL+++V+ ATR+QRFERVT+NLKV R+F+TLVEE+KA+G++S ++ ++VM
Sbjct: 178 SADVEPKKKLKHIVMAATREQRFERVTKNLKVARVFNTLVEEMKAMGIASVDDSECTEVM 237
Query: 168 VPAAHCDRSPVXXXXXXXXXXXKSTVLKDILKEAFWSGXXXXXXXXXXXXFKETDVIYRA 227
P AH DRSPV KSTVLKDILKE FW+G FKE+DVIYRA
Sbjct: 238 APVAHKDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGADAVVIEADA--FKESDVIYRA 295
Query: 228 ISSRGHHNDMLQTAELVHQSSMDAASSLLVTALNEGRDVIMDGTMSWEPFVQQTITMARA 287
+S+RGH DM++TAE VHQSS DAASSLLVTALNEGRDVIMDGT+SW PFV QTITMAR
Sbjct: 296 LSARGH-VDMIKTAEFVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARN 354
Query: 288 VHRQRYRMGVGYKVTEDGSITEEYWEPV-EDSSTDEEGETRNRKPYRIELVGVVCDAYLA 346
VHR RYRMG GYKV E+G + E YWE + E E+G R RKPYRIELVGVVCDAYLA
Sbjct: 355 VHRHRYRMGAGYKVGENGDVIENYWERIGERQQLQEDG--RERKPYRIELVGVVCDAYLA 412
Query: 347 VVRGIRRAVITGRAVRVKSQLKSHKRFATAFHSYCNLVDNARLYCTNST-GAAKLIGWKD 405
V+RGIRRA++ RAVRV+SQL+SHKRFA AF +YCNLVDNARLYCTN+ G+ KLIGWK+
Sbjct: 413 VIRGIRRAIMCRRAVRVRSQLRSHKRFANAFLTYCNLVDNARLYCTNALEGSPKLIGWKE 472
Query: 406 GESNLLVDPEEIGCLERVSHLNDEADCVHEIY----PDGSAAAAWEALVTSPSRAPAQRE 461
E LLVDPEEI CL+ V LN+ AD ++E+Y P A + W+ +V SPSR Q+E
Sbjct: 473 KEKTLLVDPEEIDCLKNVGRLNENADSIYELYRNPNPACEAGSIWKDIVLSPSRFNIQQE 532
Query: 462 IMAAVQRSEARFR 474
+ ++Q+ E RF+
Sbjct: 533 LKYSIQKVE-RFK 544
>AT1G04280.1 | chr1:1143643-1146541 REVERSE LENGTH=535
Length = 534
Score = 530 bits (1366), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/468 (59%), Positives = 338/468 (72%), Gaps = 8/468 (1%)
Query: 9 APRLLVSDSGRVHEMERFSHYVARQIGFDHVDECPHLCTLAYDYLRKNKGYEENIFAFFQ 68
AP + DSGR +ERFSHYVARQ+GF+ +E P LC LA YL K KGY+EN+ + +
Sbjct: 63 APLIERKDSGRRSNLERFSHYVARQLGFEDPNEYPQLCKLANGYLLKTKGYDENVDEYLE 122
Query: 69 NSQDPETLIVKFIEELDKCILGYFSFHWNYATYIISQVLTVEGAPK-RKLRNMVLEATRK 127
N + ++L V +EE D+CIL YFSF+W ++ +ISQ L+ E K KL++ V+ ATRK
Sbjct: 123 NEAERDSLYVHLLEEFDRCILTYFSFNWTQSSNLISQALSDESDQKVPKLKDFVMAATRK 182
Query: 128 QRFERVTRNLKVTRLFSTLVEELKAIGLSSHVEAPRSDVMVPAAHCDRSPVXXXXXXXXX 187
QRFERVT++LKV R+ STLVEE++ IG S E ++VM P AH RSPV
Sbjct: 183 QRFERVTKDLKVKRVISTLVEEMRVIG-SGSSEPHCTEVMSPVAHNKRSPVLLLMGGGMG 241
Query: 188 XXKSTVLKDILKEAFWSGXXXXXXXXXXXXFKETDVIYRAISSRGHHNDMLQTAELVHQS 247
KSTVLKDI E+FWS FKETDVIYRA+SSRGHH+DMLQTAELVHQS
Sbjct: 242 AGKSTVLKDIFLESFWSEAQADAVVIEADAFKETDVIYRALSSRGHHDDMLQTAELVHQS 301
Query: 248 SMDAASSLLVTALNEGRDVIMDGTMSWEPFVQQTITMARAVHRQRYRMGVGYKVTEDGSI 307
S DAASSLLVTALN+GRDVIMDGT+SWEPFV+Q I MAR VH+Q+YRMG GYKV+E+G+I
Sbjct: 302 STDAASSLLVTALNDGRDVIMDGTLSWEPFVEQMIEMARNVHKQKYRMGEGYKVSEEGTI 361
Query: 308 TEEYWEPVEDSSTDEEGETRNRKPYRIELVGVVCDAYLAVVRGIRRAVITGRAVRVKSQL 367
TE+YWE E+ T E G+ +N KPYRIELVGVVCDAYLAV RGIRRA++ RAVRVK QL
Sbjct: 362 TEKYWE-EEEEETKENGKQQNLKPYRIELVGVVCDAYLAVARGIRRALMVKRAVRVKPQL 420
Query: 368 KSHKRFATAFHSYCNLVDNARLYCTNSTGA-AKLIGWKDGESNLLVDPEEIGCLERVSHL 426
SHKRFA AF YC LVDNARLYCTN+ G +LI WKDG S LLVDPE+I CL+RVS L
Sbjct: 421 NSHKRFANAFPKYCELVDNARLYCTNAVGGPPRLIAWKDGNSKLLVDPEDIDCLKRVSSL 480
Query: 427 NDEADCVHEIYPDGS----AAAAWEALVTSPSRAPAQREIMAAVQRSE 470
N +A+ ++E+YPD S + W +V PSR Q+E+ A++R E
Sbjct: 481 NPDAESIYELYPDPSQLSKPGSVWNDVVLVPSRPKVQKELSDAIRRIE 528
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,480,214
Number of extensions: 370251
Number of successful extensions: 961
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 3
Length of query: 480
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 378
Effective length of database: 8,310,137
Effective search space: 3141231786
Effective search space used: 3141231786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)