BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0498500 Os05g0498500|AK063878
         (148 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0498500  Hypothetical protein                                302   6e-83
Os08g0190700  Conserved hypothetical protein                       70   4e-13

>Os05g0498500 Hypothetical protein
          Length = 148

 Score =  302 bits (773), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   CGGNDASVSGTDWDDNRSNSEISEVCSTTAEKYRKKGSSFGRLWRSSNGDGHKKTGSELL 60
           CGGNDASVSGTDWDDNRSNSEISEVCSTTAEKYRKKGSSFGRLWRSSNGDGHKKTGSELL
Sbjct: 1   CGGNDASVSGTDWDDNRSNSEISEVCSTTAEKYRKKGSSFGRLWRSSNGDGHKKTGSELL 60

Query: 61  NGRLSSGRMSNAALSPSLKNGEVCTVSPSVGEWSPDLLNPHVVRAMKGCIEWPRGAQKQN 120
           NGRLSSGRMSNAALSPSLKNGEVCTVSPSVGEWSPDLLNPHVVRAMKGCIEWPRGAQKQN
Sbjct: 61  NGRLSSGRMSNAALSPSLKNGEVCTVSPSVGEWSPDLLNPHVVRAMKGCIEWPRGAQKQN 120

Query: 121 THNLKSKLLEAKLDGHKVQLRQALKQKI 148
           THNLKSKLLEAKLDGHKVQLRQALKQKI
Sbjct: 121 THNLKSKLLEAKLDGHKVQLRQALKQKI 148



>Os08g0190700 Conserved hypothetical protein
          Length = 675

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 11/132 (8%)

Query: 21  EISEVCSTTAEKYRKKGSSFGRLWRSS---NGDGHKKTGSELLNGRLSSGRMSNAALSPS 77
           E+S+      +  +KK S+  + W+SS   N +  K    E++N R S+ R+SN   S +
Sbjct: 549 ELSKAYFADRKPSKKKESAISKFWKSSPLKNCEIFKIDVVEMMNRRSSNERLSNGMHSSN 608

Query: 78  L-KNGEVCTVSPSVGEWS-PDLLNPHVVRAMKGCIEWPRGAQKQNTHNLKSKLLEAKLDG 135
              N +    SPS+G+WS PD +N  + R  +GC+E     QKQ+   LK+KLLEA+++ 
Sbjct: 609 EGANQDAGLSSPSIGQWSSPDSMNSQLNRGFRGCMEL---VQKQS---LKAKLLEARMES 662

Query: 136 HKVQLRQALKQK 147
            K+QLR  L QK
Sbjct: 663 QKIQLRHVLNQK 674



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.127    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,558,717
Number of extensions: 234008
Number of successful extensions: 562
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 2
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 151 (62.8 bits)