BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0496100 Os05g0496100|Os05g0496100
         (216 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0496100  Conserved hypothetical protein                      223   9e-59
Os02g0122300  Conserved hypothetical protein                       72   2e-13

>Os05g0496100 Conserved hypothetical protein
          Length = 216

 Score =  223 bits (568), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 123/216 (56%), Positives = 123/216 (56%)

Query: 1   MASWXXXXXXXXXXQSMGKRLWEDEDAGXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXX 60
           MASW          QSMGKRLWEDEDAG                 P              
Sbjct: 1   MASWDDDEFSDEEEQSMGKRLWEDEDAGDDFAAVKDTWDDDDDVKPGKETAATAASTKPP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXTPSETSTSNAAAEIAQKQPDDDEPIEKFVPKSEKEFAEYA 120
                               TPSETSTSNAAAEIAQKQPDDDEPIEKFVPKSEKEFAEYA
Sbjct: 61  ATKGKKSQANAKAKAEAADATPSETSTSNAAAEIAQKQPDDDEPIEKFVPKSEKEFAEYA 120

Query: 121 ERIAKDLLRPYEKSYHYIGLMKAMNKLAVASLTSTSVKEIVSSMTTVXXXXXXXXXXXXX 180
           ERIAKDLLRPYEKSYHYIGLMKAMNKLAVASLTSTSVKEIVSSMTTV             
Sbjct: 121 ERIAKDLLRPYEKSYHYIGLMKAMNKLAVASLTSTSVKEIVSSMTTVANEKLKAEKAADA 180

Query: 181 XXXXXXXXXXRLHVNKAEGQKFRXXXXXXXXXCLSS 216
                     RLHVNKAEGQKFR         CLSS
Sbjct: 181 GKKKPGQKKKRLHVNKAEGQKFRDADDDDDDDCLSS 216



>Os02g0122300 Conserved hypothetical protein
          Length = 231

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 105 IEKFVPKSEKEFAEYAERIAKDLLRPYEKSYHYIGLMKAMNKLAVASLTSTSVKEIVSSM 164
           ++ F+PKSE +FAEYAE IA + LRPYEKS+HY+GL+K + +L++ASL     K+I SS+
Sbjct: 120 LDTFIPKSESDFAEYAELIA-NKLRPYEKSFHYMGLLKNVMRLSMASLKGADAKDISSSI 178

Query: 165 TTV 167
             +
Sbjct: 179 AAI 181



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.123    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,528,513
Number of extensions: 93411
Number of successful extensions: 320
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)