BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0494100 Os05g0494100|AK068320
         (290 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0494100  Histone-fold domain containing protein              536   e-153
Os11g0544700  Repressor protein                                   165   5e-41

>Os05g0494100 Histone-fold domain containing protein
          Length = 290

 Score =  536 bits (1382), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/280 (94%), Positives = 264/280 (94%)

Query: 1   MRKKLDTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVK 60
           MRKKLDTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVK
Sbjct: 1   MRKKLDTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVK 60

Query: 61  TLSSSHLKQCIHSYNVYDFLRDVVSKVPDMGTSDAGVDDKLGKRRKTAEDDSEEESKRTR 120
           TLSSSHLKQCIHSYNVYDFLRDVVSKVPDMGTSDAGVDDKLGKRRKTAEDDSEEESKRTR
Sbjct: 61  TLSSSHLKQCIHSYNVYDFLRDVVSKVPDMGTSDAGVDDKLGKRRKTAEDDSEEESKRTR 120

Query: 121 NEAASQTSTXXXXXXXXXXXXXXXXVSEREIISAYEKFEENHEFPPGQFSKPSQLKVDVS 180
           NEAASQTST                VSEREIISAYEKFEENHEFPPGQFSKPSQLKVDVS
Sbjct: 121 NEAASQTSTGRGRGRGRGRGRRGGRVSEREIISAYEKFEENHEFPPGQFSKPSQLKVDVS 180

Query: 181 VDGTDAIETKEATPLSNARASLRNIDLNIELTDYDDEGSAPLEVQPPAPAAGVVTTSSGP 240
           VDGTDAIETKEATPLSNARASLRNIDLNIELTDYDDEGSAPLEVQPPAPAAGVVTTSSGP
Sbjct: 181 VDGTDAIETKEATPLSNARASLRNIDLNIELTDYDDEGSAPLEVQPPAPAAGVVTTSSGP 240

Query: 241 LVSEVNEEAKTKDFLGWQLPELTKMAMDPVQFALSSNHRL 280
           LVSEVNEEAKTKDFLGWQLPELTKMAMDPVQFALSSNHRL
Sbjct: 241 LVSEVNEEAKTKDFLGWQLPELTKMAMDPVQFALSSNHRL 280



>Os11g0544700 Repressor protein
          Length = 258

 Score =  165 bits (417), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 101/122 (82%), Gaps = 1/122 (0%)

Query: 1   MRKKLDTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVK 60
           MRKKL TRFPA RIKKIMQADEDVGKIALAVPVLVS+ALELFLQDL +RTY+IT+Q G K
Sbjct: 1   MRKKLGTRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAK 60

Query: 61  TLSSSHLKQCIHSYNVYDFLRDVVSKVPDMGTSDAGVDDK-LGKRRKTAEDDSEEESKRT 119
           TL+S HLKQC+  Y+ +DFL +VV+KVPD+G +D+  DD+ L +RRK   + S+ E++ +
Sbjct: 61  TLNSFHLKQCVRRYSSFDFLTEVVNKVPDLGGADSCGDDRALPRRRKALPNGSDPENEES 120

Query: 120 RN 121
           R+
Sbjct: 121 RS 122



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.128    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,278,379
Number of extensions: 360818
Number of successful extensions: 1224
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1222
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 155 (64.3 bits)