Os11g0544700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Repressor protein.
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Os11g0544700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Repressor protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.89 | 0.181 | 12.6 | -0.433 | 0.686 | 0.485 | 0.145 | 1.49 | 0.182 | 2.69 | 70.39 | 9417 | -- | -- |
| 17.24 | 0.193 | 12.6 | -0.27 | 0.667 | 0.546 | 0.168 | -- | 0.269 | 2.93 | 74.99 | 7361 | -- | -- |
| 14.96 | 0.18 | 12.6 | -0.435 | 0.683 | 0.485 | -- | 1.49 | 0.181 | 2.68 | 70.36 | 9385 | -- | -- |
| 17.29 | 0.194 | 12.6 | -0.271 | 0.659 | 0.547 | -- | -- | 0.282 | 2.87 | 74.54 | 7373 | -- | -- |
| 31.94 | 0.265 | 12.7 | -0.176 | -- | 0.423 | -- | 0.342 | 0.0947 | -- | 70.36 | 9385 | -- | -- |
| 22.35 | 0.222 | 12.7 | -0.215 | 0.678 | -- | 0.107 | -- | 0.103 | 2.92 | -- | -- | -- | -- |
| 22.38 | 0.222 | 12.7 | -0.217 | 0.679 | -- | -- | -- | 0.102 | 2.91 | -- | -- | -- | -- |
| 27.78 | 0.247 | 12.7 | -0.15 | -- | 0.446 | -- | -- | 0.133 | -- | 74.97 | 4630 | -- | -- |
| 19.26 | 0.204 | 12.6 | -- | 0.659 | 0.519 | -- | -- | 0.302 | 2.88 | 75 | 7373 | -- | -- |
| 48.93 | 0.327 | 12.7 | -0.188 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 23.63 | 0.227 | 12.7 | -- | 0.674 | -- | -- | -- | 0.126 | 2.91 | -- | -- | -- | -- |
| 28.38 | 0.249 | 12.7 | -- | -- | 0.449 | -- | -- | 0.15 | -- | 74.97 | 4630 | -- | -- |
| 49.87 | 0.33 | 12.7 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.38 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 2 | 15.41 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 4 | 15.42 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 5 | 15.42 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 6 | 15.46 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 7 | 15.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 10 | 15.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 24 | 15.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 33 | 15.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 36 | 15.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 39 | 15.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 40 | 15.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 52 | 15.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 53 | 15.55 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 55 | 15.55 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 66 | 15.57 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 104 | 15.61 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 115 | 15.62 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 117 | 15.63 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 118 | 15.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 120 | 15.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 121 | 15.63 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 125 | 15.64 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 132 | 15.66 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 150 | 15.67 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 190 | 15.69 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 194 | 15.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 203 | 15.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 210 | 15.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 214 | 15.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 224 | 15.71 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 229 | 15.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 238 | 15.72 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 254 | 15.73 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 306 | 15.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 340 | 15.77 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 345 | 15.77 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 369 | 15.78 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 373 | 15.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 22 |
| 397 | 15.79 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 399 | 15.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 411 | 15.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 420 | 15.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 22 |
| 426 | 15.80 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 433 | 15.80 | humidity | 50.0 | 14400 | > th | dose dependent | sin | 20 | NA |
| 563 | 15.84 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 569 | 15.84 | humidity | 90.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 598 | 15.85 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 599 | 15.85 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 600 | 15.85 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 627 | 15.86 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 628 | 15.86 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 640 | 15.86 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 669 | 15.87 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 670 | 15.87 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 671 | 15.87 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 712 | 15.88 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 742 | 15.89 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 807 | 15.90 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 808 | 15.90 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 815 | 15.91 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 826 | 15.91 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 845 | 15.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 872 | 15.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 18 |
| 880 | 15.92 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 896 | 15.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 18 |
| 900 | 15.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 901 | 15.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 903 | 15.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 962 | 15.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 18 |
| 966 | 15.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 969 | 15.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 22 |
| 977 | 15.94 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |