Os05g0494100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-fold domain containing protein.
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Os05g0494100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.69 | 0.256 | 9.89 | -0.297 | 0.254 | 0.749 | -0.512 | -1.63 | -0.179 | 3.05 | 28.99 | 3670 | -- | -- |
| 30.19 | 0.256 | 9.92 | -0.627 | 0.273 | 0.564 | -0.515 | -- | -0.222 | 3.37 | 28.08 | 3628 | -- | -- |
| 30.4 | 0.257 | 9.89 | -0.313 | 0.264 | 0.73 | -- | -1.41 | -0.175 | 3.65 | 28.8 | 3695 | -- | -- |
| 30.82 | 0.259 | 9.92 | -0.622 | 0.263 | 0.574 | -- | -- | -0.229 | 3.84 | 28 | 3601 | -- | -- |
| 34.08 | 0.272 | 9.89 | -0.319 | -- | 0.708 | -- | -1.42 | -0.17 | -- | 28.7 | 3545 | -- | -- |
| 39.71 | 0.295 | 9.93 | -0.799 | 0.23 | -- | -0.509 | -- | -0.278 | 3.74 | -- | -- | -- | -- |
| 40.26 | 0.297 | 9.93 | -0.791 | 0.241 | -- | -- | -- | -0.275 | 4.73 | -- | -- | -- | -- |
| 34.49 | 0.274 | 9.91 | -0.548 | -- | 0.492 | -- | -- | -0.109 | -- | 27.3 | 6389 | -- | -- |
| 39.29 | 0.292 | 9.9 | -- | 0.274 | 0.756 | -- | -- | -0.129 | 3.7 | 26.7 | 3702 | -- | -- |
| 43.35 | 0.308 | 9.93 | -0.782 | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
| 56.77 | 0.352 | 9.91 | -- | 0.227 | -- | -- | -- | -0.187 | 4.83 | -- | -- | -- | -- |
| 37.17 | 0.284 | 9.85 | -- | -- | 0.773 | -- | -- | 0.158 | -- | 25 | 14935 | -- | -- |
| 59.49 | 0.36 | 9.91 | -- | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 28.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 5 | 28.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 7 | 28.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 8 | 28.81 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 27 | 28.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 31 | 28.90 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 40 | 28.94 | temperature | 10 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 41 | 28.94 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 58 | 29.00 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 66 | 29.04 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 110 | 29.17 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 122 | 29.18 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 124 | 29.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 160 | 29.24 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 286 | 29.42 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 314 | 29.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 367 | 29.53 | temperature | 25 | 14400 | < th | dose dependent | sin | 18 | NA |
| 376 | 29.54 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 388 | 29.55 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 518 | 29.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 519 | 29.64 | temperature | 10 | 14400 | > th | dose dependent | sin | 17 | NA |
| 595 | 29.68 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 835 | 29.80 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 837 | 29.80 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 918 | 29.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 984 | 29.86 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 5 |