BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0494100 Os05g0494100|AK068320
(290 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12480.1 | chr3:3958065-3960278 FORWARD LENGTH=294 176 1e-44
AT5G19490.1 | chr5:6576769-6578273 REVERSE LENGTH=265 162 2e-40
AT5G50480.1 | chr5:20557856-20558464 REVERSE LENGTH=203 65 5e-11
AT1G54830.2 | chr1:20451672-20452325 FORWARD LENGTH=218 61 5e-10
AT1G08970.4 | chr1:2883144-2883839 FORWARD LENGTH=232 61 9e-10
AT5G63470.1 | chr5:25416037-25417084 REVERSE LENGTH=251 60 1e-09
AT3G48590.1 | chr3:18008893-18009938 REVERSE LENGTH=235 60 1e-09
AT1G56170.1 | chr1:21025118-21025717 FORWARD LENGTH=200 60 1e-09
AT5G50490.1 | chr5:20560610-20561170 REVERSE LENGTH=187 59 4e-09
AT5G27910.1 | chr5:9940736-9941299 REVERSE LENGTH=188 57 2e-08
AT5G50470.1 | chr5:20555120-20555758 REVERSE LENGTH=213 55 6e-08
AT1G07980.1 | chr1:2473523-2474910 REVERSE LENGTH=207 52 4e-07
AT5G38140.1 | chr5:15220377-15222025 REVERSE LENGTH=196 51 8e-07
>AT3G12480.1 | chr3:3958065-3960278 FORWARD LENGTH=294
Length = 293
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/139 (64%), Positives = 107/139 (76%), Gaps = 10/139 (7%)
Query: 1 MRKKLDTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVK 60
MRKKLDTRFPA RIKKIMQADEDVGKIALAVPVLVSK+LELFLQDLC+RTY+IT++RG K
Sbjct: 1 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAK 60
Query: 61 TLSSSHLKQCIHSYNVYDFLRDVVSKVPDMGTS------DAGVDDK-LGKRRKTAED--- 110
T+SS HLK C+ YNV+DFLR+VVSKVPD G S D +DD+ + KRRK D
Sbjct: 61 TVSSLHLKHCVERYNVFDFLREVVSKVPDYGHSQGQGHGDVTMDDRSISKRRKPISDEVN 120
Query: 111 DSEEESKRTRNEAASQTST 129
DS+EE K+++ + T
Sbjct: 121 DSDEEYKKSKTQEIGSAKT 139
>AT5G19490.1 | chr5:6576769-6578273 REVERSE LENGTH=265
Length = 264
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 133/231 (57%), Gaps = 13/231 (5%)
Query: 1 MRKKLDTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVK 60
M+KKL TRFPA RIKKIMQ DE+VGKIA+AVP+LVSKALELFLQDLCN TYD+T+ RG K
Sbjct: 1 MKKKLQTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAK 60
Query: 61 TLSSSHLKQCIHSYNVYDFLRDVVSKVPDMGTSDAGVDDKLGKRRKTAEDDS---EEESK 117
T+++ HLKQC+ + NV+DFLRD V+KVPD+G SD D KRRK + S E+ K
Sbjct: 61 TVNAFHLKQCVQATNVFDFLRDTVAKVPDLGGSDTE-DQSATKRRKVVDGSSCNDEDMIK 119
Query: 118 RTRNEAASQTSTXXXXXXXXXXXXXXXXVSEREIISAYEKFEENHE-FPPGQFSKPSQLK 176
T+ TS S + KFEE+ E P PS
Sbjct: 120 TTQMHEVKHTSCGRGRRGRGRGRSSGRTGSGLSL-----KFEEDLEDGSPESSRTPSPEN 174
Query: 177 VDVSVDGTD--AIETKEATPLSNARASLRNIDLNIELTDYDDEGSAPLEVQ 225
+S D T + + SN+ +RN DLN+EL D + + + LE Q
Sbjct: 175 GSLSHDDTSWKKVASHNNHHSSNSEVKVRNFDLNVEL-DENGDNATWLETQ 224
>AT5G50480.1 | chr5:20557856-20558464 REVERSE LENGTH=203
Length = 202
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%)
Query: 8 RFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHL 67
+ P RIKKIM+AD DV ++ P++ +KA E+F+ DL R++ + TL S +
Sbjct: 54 QLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDI 113
Query: 68 KQCIHSYNVYDFLRDVVSKVPDMGTSDAG 96
+ S YDFL DVV K + T+D G
Sbjct: 114 SNAVASSFTYDFLLDVVPKDESIATADPG 142
>AT1G54830.2 | chr1:20451672-20452325 FORWARD LENGTH=218
Length = 217
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 9 FPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHLK 68
P RIKKIM+ADEDV I+ PV+ ++A E+F+ +L R+++ T + +TL + +
Sbjct: 71 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 130
Query: 69 QCIHSYNVYDFLRDVVSK 86
+ +++DFL D+V +
Sbjct: 131 AAVTRTDIFDFLVDIVPR 148
>AT1G08970.4 | chr1:2883144-2883839 FORWARD LENGTH=232
Length = 231
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 9 FPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHLK 68
P RIKKIM+ADEDV I+ PV+ ++A E+F+ +L R+++ T + +TL + +
Sbjct: 81 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 140
Query: 69 QCIHSYNVYDFLRDVVSK 86
+ +++DFL D+V +
Sbjct: 141 AAVTRTDIFDFLVDIVPR 158
>AT5G63470.1 | chr5:25416037-25417084 REVERSE LENGTH=251
Length = 250
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 8 RFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHL 67
+ P RIKKIM+ADEDV I+ P+L +KA ELF+ +L R++ + +TL + +
Sbjct: 78 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 137
Query: 68 KQCIHSYNVYDFLRDVVSK 86
I +++DFL D+V +
Sbjct: 138 AAAITRTDIFDFLVDIVPR 156
>AT3G48590.1 | chr3:18008893-18009938 REVERSE LENGTH=235
Length = 234
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 8 RFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHL 67
+ P RIKKIM+ADEDV I+ P+L +KA ELF+ +L R++ + +TL + +
Sbjct: 65 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 124
Query: 68 KQCIHSYNVYDFLRDVVSK 86
I +++DFL D+V +
Sbjct: 125 AAAITRTDIFDFLVDIVPR 143
>AT1G56170.1 | chr1:21025118-21025717 FORWARD LENGTH=200
Length = 199
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 9 FPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHLK 68
P RIKKIM+ADEDV I+ PV+ +KA E+F+ +L R + T + +TL + +
Sbjct: 77 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIA 136
Query: 69 QCIHSYNVYDFLRDVVSK 86
I +V+DFL D++ +
Sbjct: 137 AAISRTDVFDFLVDIIPR 154
>AT5G50490.1 | chr5:20560610-20561170 REVERSE LENGTH=187
Length = 186
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 9 FPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHLK 68
FP RIK+IM+ D DV IA P L+SKA E+F+ DL R++ + T+ S +
Sbjct: 37 FPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDVD 96
Query: 69 QCIHSYNVYDFLRDVVSK 86
+ ++DFLRD V K
Sbjct: 97 AVVSQTVIFDFLRDDVPK 114
>AT5G27910.1 | chr5:9940736-9941299 REVERSE LENGTH=188
Length = 187
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1 MRKKLDTR---FPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQR 57
M LD + P RIKKIM+ D DV IA P+L+SKA E+F+ DL R++ +
Sbjct: 26 MEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQES 85
Query: 58 GVKTLSSSHLKQCIHSYNVYDFLRD 82
TL S++ + ++DFL D
Sbjct: 86 KRVTLQKSNVDAAVAQTVIFDFLLD 110
>AT5G50470.1 | chr5:20555120-20555758 REVERSE LENGTH=213
Length = 212
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 9 FPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVK------TL 62
FP RIKKIM+++ +V + PVL+SKA E+ + DL R++ TV+ G + TL
Sbjct: 64 FPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRSDTL 123
Query: 63 SSSHLKQCIHSYNVYDFLRDVVSKVPDMGTSD 94
+ S + + FL DVV + P + T D
Sbjct: 124 TRSDISAATTRSFKFTFLGDVVPRDPSVVTDD 155
>AT1G07980.1 | chr1:2473523-2474910 REVERSE LENGTH=207
Length = 206
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 8 RFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHL 67
+FP RI++IM++D +I LV+KA E+F++ YD +V+ K + HL
Sbjct: 109 KFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHL 168
Query: 68 KQCIHSYNVYDFLRDVV 84
+ + Y+FL D V
Sbjct: 169 SSVVSNDQRYEFLADSV 185
>AT5G38140.1 | chr5:15220377-15222025 REVERSE LENGTH=196
Length = 195
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 7 TRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSH 66
T P R++KI+++D +V KI+ VP L SKA E F+ ++ R + T +T+
Sbjct: 66 THLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQSCTRETIRRCD 125
Query: 67 LKQCIHSYNVYDFLRDVVSKVPDMGT 92
+ Q + + YDFL D V P T
Sbjct: 126 IFQAVKNSGTYDFLIDRVPFGPHCVT 151
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.128 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,973,162
Number of extensions: 234854
Number of successful extensions: 729
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 13
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 111 (47.4 bits)