BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0488500 Os05g0488500|AK109649
         (241 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0488500  Ribosomal protein L34e family protein               270   7e-73
Os01g0815100  Ribosomal protein L34e family protein               173   9e-44
Os05g0393200  Ribosomal protein L34e family protein                75   6e-14

>Os05g0488500 Ribosomal protein L34e family protein
          Length = 241

 Score =  270 bits (690), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 154/241 (63%), Positives = 154/241 (63%)

Query: 1   MADCRSLIEFLRAFEXXXXXXXXXXSTDSAACGTAPAXXXXXXXXXXXXXXLFTSLCDHS 60
           MADCRSLIEFLRAFE          STDSAACGTAPA              LFTSLCDHS
Sbjct: 1   MADCRSLIEFLRAFEHRHRHHAAAASTDSAACGTAPARPRRGSSPRRGRRRLFTSLCDHS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXTPYVRMVAAEVGGLVSDLDAAGVASSYYAPFXXXXXXXX 120
                                TPYVRMVAAEVGGLVSDLDAAGVASSYYAPF        
Sbjct: 61  AMAAVDAVALLAVVSALAFLVTPYVRMVAAEVGGLVSDLDAAGVASSYYAPFAAAGAGAA 120

Query: 121 XXXXXXXXXXXXXXHRARRCGKPRCRGLRKAVEFDIQLETEECVRGQQQXXXXXXXXXXX 180
                         HRARRCGKPRCRGLRKAVEFDIQLETEECVRGQQQ           
Sbjct: 121 IAAVAGVVAWDAVGHRARRCGKPRCRGLRKAVEFDIQLETEECVRGQQQRLLPLPGGRAA 180

Query: 181 XXXXXXXXXVQLGDAHRELEAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIK 240
                    VQLGDAHRELEAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIK
Sbjct: 181 LLAAAGARPVQLGDAHRELEAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIK 240

Query: 241 K 241
           K
Sbjct: 241 K 241



>Os01g0815100 Ribosomal protein L34e family protein
          Length = 218

 Score =  173 bits (439), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 121/241 (50%), Gaps = 23/241 (9%)

Query: 1   MADCRSLIEFLRAFEXXXXXXXXXXSTDSAACGTAPAXXXXXXXXXXXXXXLFTSLCDHS 60
           MADCRSLIEFLRAFE          +   ++                      T+LCDHS
Sbjct: 1   MADCRSLIEFLRAFEHHRRAADSAAAAGCSS----------SSSRSRRGGSSLTALCDHS 50

Query: 61  XXXXXXXXXXXXXXXXXXXXXTPYVRMVAAEVGGLVSDLDAAGVASSYYAPFXXXXXXXX 120
                                 PY +M   E+G L+    AA   S+             
Sbjct: 51  PMAAVDAVVLLAVVAALGFLVVPYAKMALLEMGALLHP--AASCLSAAAF------AGAA 102

Query: 121 XXXXXXXXXXXXXXHRARRCGKPRCRGLRKAVEFDIQLETEECVRGQQQXXXXXXXXXXX 180
                         H AR+CGKPRCRGL+KAVEFDIQLETEECVRG              
Sbjct: 103 VAVAAAVLAWELVGHHARKCGKPRCRGLKKAVEFDIQLETEECVRGHPAPAARSALLAAA 162

Query: 181 XXXXXXXXXVQLGDAHRELEAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIK 240
                    V+LGDAHRELEAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIK
Sbjct: 163 GAHP-----VELGDAHRELEAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIK 217

Query: 241 K 241
           K
Sbjct: 218 K 218



>Os05g0393200 Ribosomal protein L34e family protein
          Length = 251

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 3/98 (3%)

Query: 147 GLRKAVEFDIQLETEECVR-GQQQXXXXXXXXXXXXXXXXXXXXVQLGDA--HRELEAEL 203
           GL KA+EFD+QL+TEE VR G                        Q G+   +  L AEL
Sbjct: 150 GLVKALEFDVQLQTEEAVRAGTGSTSGGADAAMWREIEALPWKGGQGGNNPDYECLRAEL 209

Query: 204 RKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIKK 241
           R+MAPPNGR VL+FR+ CGCP  ++E WG  K +R  K
Sbjct: 210 RRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKRRSK 247



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,996,056
Number of extensions: 114139
Number of successful extensions: 180
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 3
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)