Os05g0393200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L34e family protein.
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Os05g0393200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L34e family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35 | 0.278 | 9.8 | 0.856 | 0.229 | -1.33 | -0.459 | 1.52 | 0.395 | 14.6 | 21.28 | 259 | -- | -- |
| 36.33 | 0.281 | 9.83 | 0.572 | 0.207 | -1.23 | -0.195 | -- | 0.322 | 14.3 | 20.85 | 263 | -- | -- |
| 35.67 | 0.278 | 9.8 | 0.829 | 0.242 | -1.35 | -- | 1.39 | 0.391 | 14.7 | 21.32 | 258 | -- | -- |
| 36.41 | 0.281 | 9.83 | 0.56 | 0.209 | -1.22 | -- | -- | 0.312 | 14.4 | 20.97 | 259 | -- | -- |
| 36.8 | 0.283 | 9.81 | 0.718 | -- | -1.18 | -- | 0.873 | 0.352 | -- | 19.99 | 407 | -- | -- |
| 62.68 | 0.371 | 9.87 | 0.282 | 0.339 | -- | 0.29 | -- | 0.104 | 5.89 | -- | -- | -- | -- |
| 62.87 | 0.371 | 9.87 | 0.285 | 0.341 | -- | -- | -- | 0.103 | 6.08 | -- | -- | -- | -- |
| 37.32 | 0.285 | 9.83 | 0.555 | -- | -1.14 | -- | -- | 0.3 | -- | 19.23 | 407 | -- | -- |
| 44.01 | 0.309 | 9.85 | -- | 0.154 | -1.05 | -- | -- | 0.218 | 13.6 | 21.73 | 259 | -- | -- |
| 68.91 | 0.388 | 9.88 | 0.295 | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
| 65.01 | 0.377 | 9.88 | -- | 0.346 | -- | -- | -- | 0.0712 | 6.04 | -- | -- | -- | -- |
| 44.66 | 0.311 | 9.85 | -- | -- | -0.977 | -- | -- | 0.215 | -- | 21.02 | 365 | -- | -- |
| 71.2 | 0.394 | 9.88 | -- | -- | -- | -- | -- | 0.0779 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.17 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 2 | 32.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 29 | 34.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 41 | 34.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 54 | 34.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 94 | 35.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 111 | 35.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 116 | 35.44 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 136 | 35.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 163 | 35.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 192 | 36.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 204 | 36.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 220 | 36.29 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 249 | 36.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 283 | 36.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 15 |
| 324 | 36.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 17 |
| 373 | 36.95 | temperature | 20 | 4320 | > th | dose dependent | sin | 5 | NA |
| 381 | 36.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 17 |
| 382 | 36.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 388 | 36.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 401 | 37.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 419 | 37.02 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 17 |
| 428 | 37.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 503 | 37.11 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 656 | 37.27 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 21 |
| 657 | 37.27 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 706 | 37.30 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 757 | 37.32 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 970 | 37.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 972 | 37.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |