BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0393200 Os05g0393200|Os05g0393200
         (251 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0393200  Ribosomal protein L34e family protein               185   4e-47
Os01g0815100  Ribosomal protein L34e family protein                70   1e-12
Os05g0488500  Ribosomal protein L34e family protein                70   2e-12

>Os05g0393200 Ribosomal protein L34e family protein
          Length = 251

 Score =  185 bits (469), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 89/102 (87%)

Query: 150 GLVKALEFDVQLQTEEAVRXXXXXXXXXXXXXMWREIEALPWKGGQGGNNPDYECLRAEL 209
           GLVKALEFDVQLQTEEAVR             MWREIEALPWKGGQGGNNPDYECLRAEL
Sbjct: 150 GLVKALEFDVQLQTEEAVRAGTGSTSGGADAAMWREIEALPWKGGQGGNNPDYECLRAEL 209

Query: 210 RRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKRRSKSMAI 251
           RRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKRRSKSMAI
Sbjct: 210 RRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKRRSKSMAI 251



>Os01g0815100 Ribosomal protein L34e family protein
          Length = 218

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 150 GLVKALEFDVQLQTEEAVRXXXXXXXXXXXXXMWREIEALPWKGGQGGNNPDYECLRAEL 209
           GL KA+EFD+QL+TEE VR                   A P + G          L AEL
Sbjct: 129 GLKKAVEFDIQLETEECVRGHPAPAARSALLAA---AGAHPVELGDAHRE-----LEAEL 180

Query: 210 RRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKRRSK 247
           R+MAPPNGR VL+FR+ CGCP  ++E WG  K +R  K
Sbjct: 181 RKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIKK 218



>Os05g0488500 Ribosomal protein L34e family protein
          Length = 241

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 150 GLVKALEFDVQLQTEEAVRXXXXXXXXXXXXXMWREIEALPWKGGQGGNNPDYECLRAEL 209
           GL KA+EFD+QL+TEE VR                   A       G  + + E   AEL
Sbjct: 147 GLRKAVEFDIQLETEECVRGQQQRLLPLPGGRAALLAAAGARPVQLGDAHRELE---AEL 203

Query: 210 RRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKRRSK 247
           R+MAPPNGR VL+FR+ CGCP  ++E WG  K +R  K
Sbjct: 204 RKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIKK 241



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,909,315
Number of extensions: 129121
Number of successful extensions: 217
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 3
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)