BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0393200 Os05g0393200|Os05g0393200
         (251 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06180.1  | chr3:1871705-1873554 FORWARD LENGTH=242            127   6e-30
AT5G19025.1  | chr5:6355220-6357083 REVERSE LENGTH=260            122   2e-28
AT3G01170.1  | chr3:58043-58690 FORWARD LENGTH=216                 67   1e-11
AT5G15260.1  | chr5:4953646-4954350 REVERSE LENGTH=235             59   2e-09

>AT3G06180.1 | chr3:1871705-1873554 FORWARD LENGTH=242
          Length = 241

 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 74/101 (73%), Gaps = 12/101 (11%)

Query: 150 GLVKALEFDVQLQTEEAVRXXXXXXXXXXXXXMWREIEALPWKGGQGGNNPDYECLRAEL 209
           GL KA+EFD+QLQTEE V+               +EI+ LPWKGG   +NPDYECLRAEL
Sbjct: 142 GLKKAMEFDLQLQTEECVKSGAT-----------KEIDRLPWKGGSE-SNPDYECLRAEL 189

Query: 210 RRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKRRSKSMA 250
           RRMAPPNGRAVLLFR+RCGCP+AKLEGWG  + +R  KS A
Sbjct: 190 RRMAPPNGRAVLLFRSRCGCPVAKLEGWGPKRGRRHKKSQA 230



>AT5G19025.1 | chr5:6355220-6357083 REVERSE LENGTH=260
          Length = 259

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 74/101 (73%), Gaps = 12/101 (11%)

Query: 150 GLVKALEFDVQLQTEEAVRXXXXXXXXXXXXXMWREIEALPWKGGQGGNNPDYECLRAEL 209
           G+ KA+EFD+QLQTEE V+               +EI+ LPWKGG   +NPDYECLRAEL
Sbjct: 160 GMKKAMEFDLQLQTEECVKSGSV-----------KEIDRLPWKGGSE-SNPDYECLRAEL 207

Query: 210 RRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKRRSKSMA 250
           R+MAP NGRAVL+FR++CGCPIAKLEGWG  +S+R  KS A
Sbjct: 208 RKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKKSPA 248



>AT3G01170.1 | chr3:58043-58690 FORWARD LENGTH=216
          Length = 215

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 18/98 (18%)

Query: 150 GLVKALEFDVQLQTEEAVRXXXXXXXXXXXXXMWREIEALPWKGGQGGNNPDYECLRAEL 209
           GL KA+EFD+QL+TEE V+               R +  LP           +  L AEL
Sbjct: 135 GLRKAVEFDIQLETEECVKSSSNK----------RGMFELP--------RVHHRELEAEL 176

Query: 210 RRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKRRSK 247
           ++MAPPNGRAVL+FR RCGC + +L   G  K +R+ K
Sbjct: 177 KKMAPPNGRAVLVFRARCGCSVRRLVVSGPKKQQRKIK 214



>AT5G15260.1 | chr5:4953646-4954350 REVERSE LENGTH=235
          Length = 234

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 15/96 (15%)

Query: 150 GLVKA-LEFDVQLQTEEAVRXXXXXXXXXXXXXMWREIEALPWKGGQGGNNPDYECLRAE 208
           GL KA  EFD+QL+TE+ V+                  +++  KG        +  L AE
Sbjct: 145 GLRKANAEFDIQLETEDCVKSSNSG-------------KSVSKKGLFELPRDHHRELEAE 191

Query: 209 LRRMAPPNGRAVLLFRNRCGCPIAKLEGWGVPKSKR 244
           L++MAPPNGRAVL+FR +CGC + +LE  G PK ++
Sbjct: 192 LKKMAPPNGRAVLVFRAKCGCSVGRLEVPG-PKKQQ 226



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,318,768
Number of extensions: 70378
Number of successful extensions: 105
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 4
Length of query: 251
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 155
Effective length of database: 8,474,633
Effective search space: 1313568115
Effective search space used: 1313568115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)