BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0479900 Os05g0479900|AK109153
(332 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0479900 Conserved hypothetical protein 460 e-130
Os01g0819700 Helix-turn-helix, Fis-type domain containing p... 137 9e-33
AK109356 137 9e-33
>Os05g0479900 Conserved hypothetical protein
Length = 332
Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/332 (74%), Positives = 246/332 (74%)
Query: 1 MQSEEVKMRFGRCPYCRAMIYQNPKAVIFYCSRCRTPIRGKNPEPTDEAEYALSRLEILS 60
MQSEEVKMRFGRCPYCRAMIYQNPKAVIFYCSRCRTPIRGKNPEPTDEAEYALSRLEILS
Sbjct: 1 MQSEEVKMRFGRCPYCRAMIYQNPKAVIFYCSRCRTPIRGKNPEPTDEAEYALSRLEILS 60
Query: 61 ADTASVFSDEPEDAGSDRRADEVRPLXXXXXXXXXXXXXXXXXXXXXXXXAFYTPRNAQE 120
ADTASVFSDEPEDAGSDRRADEVRPL AFYTPRNAQE
Sbjct: 61 ADTASVFSDEPEDAGSDRRADEVRPLSRRTRRPSSSSDWTTTTDSERSEEAFYTPRNAQE 120
Query: 121 GRPWQSPSPVSSQELXXXXXXXXXXXXXXXXXAVAAARLMDPAFHKELLHALDNLRSLIV 180
GRPWQSPSPVSSQEL AVAAARLMDPAFHKELLHALDNLRSLIV
Sbjct: 121 GRPWQSPSPVSSQELGASGGGGGLPRPPDEPGAVAAARLMDPAFHKELLHALDNLRSLIV 180
Query: 181 TIEQPRPASGGGGRALTRRDSRLFRRLESQLERALPPQXXXXXXXXXXXXXXXXXXXXXX 240
TIEQPRPASGGGGRALTRRDSRLFRRLESQLERALPPQ
Sbjct: 181 TIEQPRPASGGGGRALTRRDSRLFRRLESQLERALPPQDTASTSASSSSCRGDGGGGRPS 240
Query: 241 XXXXXEGTDPCRPVLGGAPFVICGKCSELLXXXXXXXXXXXXXXXXXXCGECNEVLELSL 300
EGTDPCRPVLGGAPFVICGKCSELL CGECNEVLELSL
Sbjct: 241 APARREGTDPCRPVLGGAPFVICGKCSELLRTPPPPRPRRRRWTTRIRCGECNEVLELSL 300
Query: 301 PAGGVPAQHRPIRTCSAPLVSDHHRPLPRRLE 332
PAGGVPAQHRPIRTCSAPLVSDHHRPLPRRLE
Sbjct: 301 PAGGVPAQHRPIRTCSAPLVSDHHRPLPRRLE 332
>Os01g0819700 Helix-turn-helix, Fis-type domain containing protein
Length = 467
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 60/72 (83%), Positives = 70/72 (97%)
Query: 1 MQSEEVKMRFGRCPYCRAMIYQNPKAVIFYCSRCRTPIRGKNPEPTDEAEYALSRLEILS 60
M+SE+VK RFGRCPYCRAMIYQ+P A+I+YCS+CRTPIRGKNPEPTD+AEYALS+LEILS
Sbjct: 1 MESEQVKRRFGRCPYCRAMIYQDPNAIIYYCSKCRTPIRGKNPEPTDDAEYALSQLEILS 60
Query: 61 ADTASVFSDEPE 72
ADTASVFSD+P+
Sbjct: 61 ADTASVFSDDPD 72
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 81/205 (39%), Gaps = 40/205 (19%)
Query: 159 LMDPAFHKELLHALDNLRSLIVTIEQPRPASGGGGRA----------------------- 195
L DPAF ++LL ALDNLR +I +EQP +A
Sbjct: 220 LTDPAFQRDLLQALDNLRRVIAAVEQPYGVDAHLQQAGMPPKSASCNDAATGGSGGGGGA 279
Query: 196 ----LTRRDSRLFRRLESQLERALPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTDPC 251
+TRR+SRL RRLESQL +ALP C
Sbjct: 280 YAAAVTRRNSRLMRRLESQLVQALPRDGLRRDRSTSSSSSASSSRPGGDRARAAGRKHHC 339
Query: 252 RPVLGGAPFVICGKCSELLXXXXXXXXXXXXXXXXXXCGECNEVLELSLPAGGVP----A 307
R VLGG PFV+C KCSE+L CG C E L + LPA +
Sbjct: 340 RAVLGGTPFVVCDKCSEIL---QLPAAVSANRAARLECGGCGETLSIKLPAAAAAAASGS 396
Query: 308 QHRPIRTCSAPLVSDHHRPLPRRLE 332
RP + SAP +P RRL+
Sbjct: 397 TDRPKKIFSAP------QPAVRRLD 415
>AK109356
Length = 382
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 60/72 (83%), Positives = 70/72 (97%)
Query: 1 MQSEEVKMRFGRCPYCRAMIYQNPKAVIFYCSRCRTPIRGKNPEPTDEAEYALSRLEILS 60
M+SE+VK RFGRCPYCRAMIYQ+P A+I+YCS+CRTPIRGKNPEPTD+AEYALS+LEILS
Sbjct: 1 MESEQVKRRFGRCPYCRAMIYQDPNAIIYYCSKCRTPIRGKNPEPTDDAEYALSQLEILS 60
Query: 61 ADTASVFSDEPE 72
ADTASVFSD+P+
Sbjct: 61 ADTASVFSDDPD 72
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 59/139 (42%), Gaps = 27/139 (19%)
Query: 159 LMDPAFHKELLHALDNLRSLIVTIEQPRPASGGGGRA----------------------- 195
L DPAF ++LL ALDNLR +I +EQP +A
Sbjct: 220 LTDPAFQRDLLQALDNLRRVIAAVEQPYGVDAHLQQAGMPPKSASCNDAATGGSGGGGGA 279
Query: 196 ----LTRRDSRLFRRLESQLERALPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTDPC 251
+TRR+SRL RRLESQL +ALP C
Sbjct: 280 YAAAVTRRNSRLMRRLESQLVQALPRDGLRRDRSTSSSSSASSSRPGGDRARAAGRKHHC 339
Query: 252 RPVLGGAPFVICGKCSELL 270
R VLGG PFV+C KCSE+L
Sbjct: 340 RAVLGGTPFVVCDKCSEIL 358
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,147,040
Number of extensions: 355030
Number of successful extensions: 1098
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1089
Number of HSP's successfully gapped: 5
Length of query: 332
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 231
Effective length of database: 11,762,187
Effective search space: 2717065197
Effective search space used: 2717065197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)