BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0473900 Os05g0473900|AK064856
         (281 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0473900  Phytanoyl-CoA dioxygenase family protein            585   e-167
Os03g0708100  Phytanoyl-CoA dioxygenase family protein            287   6e-78

>Os05g0473900 Phytanoyl-CoA dioxygenase family protein
          Length = 281

 Score =  585 bits (1509), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/281 (100%), Positives = 281/281 (100%)

Query: 1   MLPAGSLTDKQLHFFDANGYLVLGSFSSAEEVKAMRDRMAVLIDGFDGAGDVFSTKDHRQ 60
           MLPAGSLTDKQLHFFDANGYLVLGSFSSAEEVKAMRDRMAVLIDGFDGAGDVFSTKDHRQ
Sbjct: 1   MLPAGSLTDKQLHFFDANGYLVLGSFSSAEEVKAMRDRMAVLIDGFDGAGDVFSTKDHRQ 60

Query: 61  VKNDFFFKSAENISFFFEEKAFGDDGCLKQAKELSINKVGHALHELDPVFKKFSFGENVS 120
           VKNDFFFKSAENISFFFEEKAFGDDGCLKQAKELSINKVGHALHELDPVFKKFSFGENVS
Sbjct: 61  VKNDFFFKSAENISFFFEEKAFGDDGCLKQAKELSINKVGHALHELDPVFKKFSFGENVS 120

Query: 121 SLFSSLRYKRPAVIQSMYIFKQPGIGGEVVPHQDNTFLYTNPPSCTGLWLALEDATKTNG 180
           SLFSSLRYKRPAVIQSMYIFKQPGIGGEVVPHQDNTFLYTNPPSCTGLWLALEDATKTNG
Sbjct: 121 SLFSSLRYKRPAVIQSMYIFKQPGIGGEVVPHQDNTFLYTNPPSCTGLWLALEDATKTNG 180

Query: 181 CLWAIPGSHKNGLKRRMIRDENDTHFDHPSPTYDLKEFVPLEVKSGDLVVIHGDLVHQSF 240
           CLWAIPGSHKNGLKRRMIRDENDTHFDHPSPTYDLKEFVPLEVKSGDLVVIHGDLVHQSF
Sbjct: 181 CLWAIPGSHKNGLKRRMIRDENDTHFDHPSPTYDLKEFVPLEVKSGDLVVIHGDLVHQSF 240

Query: 241 ENLSLVSRHALSLHVIDTEGCEWSKQNWLQRKIPPQPLYEN 281
           ENLSLVSRHALSLHVIDTEGCEWSKQNWLQRKIPPQPLYEN
Sbjct: 241 ENLSLVSRHALSLHVIDTEGCEWSKQNWLQRKIPPQPLYEN 281



>Os03g0708100 Phytanoyl-CoA dioxygenase family protein
          Length = 138

 Score =  287 bits (734), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 134/138 (97%), Positives = 136/138 (98%)

Query: 144 GIGGEVVPHQDNTFLYTNPPSCTGLWLALEDATKTNGCLWAIPGSHKNGLKRRMIRDEND 203
           GIGGEVVPHQDNTFLYT+PPSCTGLWLALEDATKTNGCLWAIPGSHKNGLKRRMIRDE D
Sbjct: 1   GIGGEVVPHQDNTFLYTDPPSCTGLWLALEDATKTNGCLWAIPGSHKNGLKRRMIRDEID 60

Query: 204 THFDHPSPTYDLKEFVPLEVKSGDLVVIHGDLVHQSFENLSLVSRHALSLHVIDTEGCEW 263
           THFDHPSPTYDLKEFVPLEVKSGDLVVIHGDL+HQSFENLS VSRHALSLHVIDTEGCEW
Sbjct: 61  THFDHPSPTYDLKEFVPLEVKSGDLVVIHGDLIHQSFENLSPVSRHALSLHVIDTEGCEW 120

Query: 264 SKQNWLQRKIPPQPLYEN 281
           SKQNWLQRKIPPQPLYEN
Sbjct: 121 SKQNWLQRKIPPQPLYEN 138



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,697,096
Number of extensions: 447246
Number of successful extensions: 838
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 181
Effective length of database: 11,814,401
Effective search space: 2138406581
Effective search space used: 2138406581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)