Os03g0708100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phytanoyl-CoA dioxygenase family protein.
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Os03g0708100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phytanoyl-CoA dioxygenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.55 | 0.197 | 11.4 | -0.00312 | 0.562 | -0.698 | -0.469 | 2.17 | 0.0561 | 18.8 | 25.3 | 4595 | -- | -- |
| 18.02 | 0.198 | 11.4 | -0.376 | 0.517 | -0.553 | -0.466 | -- | 0.146 | 18.7 | 20.98 | 8793 | -- | -- |
| 18.1 | 0.198 | 11.4 | 0.00197 | 0.557 | -0.698 | -- | 2.16 | 0.0567 | 18.9 | 25.3 | 4580 | -- | -- |
| 18.52 | 0.2 | 11.4 | -0.381 | 0.538 | -0.523 | -- | -- | 0.117 | 18.9 | 20.9 | 8807 | -- | -- |
| 33.66 | 0.27 | 11.4 | -0.159 | -- | -0.617 | -- | 1.22 | 0.079 | -- | 22.9 | 4402 | -- | -- |
| 26.4 | 0.241 | 11.4 | -0.695 | 0.546 | -- | -0.485 | -- | -0.0765 | 18.7 | -- | -- | -- | -- |
| 27 | 0.243 | 11.4 | -0.688 | 0.544 | -- | -- | -- | -0.078 | 18.8 | -- | -- | -- | -- |
| 33.24 | 0.269 | 11.4 | -0.433 | -- | -0.514 | -- | -- | 0.0871 | -- | 21 | 7175 | -- | -- |
| 19.32 | 0.205 | 11.4 | -- | 0.564 | -0.761 | -- | -- | 0.284 | 18.7 | 17.84 | 17508 | -- | -- |
| 42.48 | 0.305 | 11.4 | -0.7 | -- | -- | -- | -- | -0.0885 | -- | -- | -- | -- | -- |
| 39.46 | 0.294 | 11.4 | -- | 0.552 | -- | -- | -- | -0.00144 | 18.8 | -- | -- | -- | -- |
| 34.39 | 0.273 | 11.4 | -- | -- | -0.786 | -- | -- | 0.271 | -- | 17.38 | 17260 | -- | -- |
| 55.39 | 0.347 | 11.4 | -- | -- | -- | -- | -- | -0.0109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 3 | 16.89 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 5 | 16.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 7 | 17.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 9 | 17.06 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 16 | 17.14 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 17 | 17.14 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 23 | 17.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 25 | 17.20 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 33 | 17.24 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 46 | 17.29 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 54 | 17.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 59 | 17.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 61 | 17.33 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 66 | 17.33 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 90 | 17.36 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 91 | 17.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 93 | 17.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 102 | 17.37 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 123 | 17.38 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 124 | 17.38 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 132 | 17.39 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 149 | 17.40 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 158 | 17.41 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 159 | 17.41 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 219 | 17.45 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 245 | 17.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 246 | 17.47 | temperature | 20 | 14400 | > th | dose dependent | sin | 11 | NA |
| 296 | 17.50 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 311 | 17.51 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 325 | 17.52 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 374 | 17.55 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |
| 376 | 17.55 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 393 | 17.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 480 | 17.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 481 | 17.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 512 | 17.60 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 535 | 17.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 569 | 17.63 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 572 | 17.63 | temperature | 25 | 14400 | > th | dose dependent | sin | 20 | NA |
| 619 | 17.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 15 |
| 806 | 17.70 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 889 | 17.72 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 977 | 17.74 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 1 |