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Os05g0473900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phytanoyl-CoA dioxygenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0172) R2 : 0.05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.177 (0.0362) R2dN8 : 0.0645 R2N8 : 0.05
σ : 0.324
deviance : 48.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.42 0.212 10.6 -0.816 0.351 -0.0895 -0.224 1.45 0.0778 0.496 13.65 4706 -- --
22.2 0.219 10.7 -0.721 0.343 -0.26 -0.244 -- 0.0724 0.338 10.19 10965 -- --
20.61 0.211 10.6 -0.806 0.345 -0.0979 -- 1.39 0.0772 0.666 22.5 4832 -- --
22.44 0.221 10.7 -0.71 0.347 -0.28 -- -- 0.0676 0.545 15.06 10944 -- --
27.85 0.246 10.6 -0.735 -- -0.26 -- 1.43 0.083 -- 28.15 3759 -- --
22.91 0.224 10.7 -0.824 0.353 -- -0.261 -- 0.0815 0.266 -- -- -- --
23.19 0.226 10.7 -0.815 0.355 -- -- -- 0.0824 0.448 -- -- -- --
27.77 0.245 10.7 -0.655 -- -0.525 -- -- 0.0629 -- 37.32 884 -- --
25.86 0.237 10.6 -- 0.36 -0.829 -- -- 0.287 0.472 29.53 47520 -- --
31.1 0.261 10.7 -0.802 -- -- -- -- 0.0882 -- -- -- -- --
40.68 0.298 10.7 -- 0.343 -- -- -- 0.173 0.327 -- -- -- --
34.01 0.272 10.6 -- -- -0.807 -- -- 0.288 -- 32.37 47520 -- --
48.08 0.324 10.6 -- -- -- -- -- 0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.42 wind 7 14400 > th dose dependent rect. 11 1
3 19.52 temperature 25 1440 > th dose dependent rect. 21 1
4 19.55 humidity 70 43200 > th dose independent rect. 20 3
5 19.55 humidity 70 43200 > th dose independent rect. 20 10
7 19.56 wind 9 14400 > th dose independent rect. 5 8
11 19.58 wind 9 14400 > th dose independent sin 4 NA
14 19.58 wind 9 14400 > th dose independent rect. 9 4
22 19.59 temperature 25 1440 > th dose dependent rect. 20 4
25 19.60 humidity 60 43200 < th dose independent rect. 18 13
34 19.61 temperature 25 1440 > th dose dependent rect. 19 8
37 19.62 humidity 70 43200 < th dose independent rect. 20 1
44 19.62 humidity 60 43200 < th dose independent rect. 18 15
50 19.63 humidity 60 43200 > th dose independent rect. 18 12
59 19.65 wind 9 14400 < th dose independent rect. 10 4
62 19.65 humidity 70 43200 < th dose independent rect. 20 11
69 19.66 wind 9 14400 < th dose independent rect. 7 7
78 19.67 wind 9 14400 > th dose independent rect. 21 20
90 19.69 wind 9 14400 > th dose independent rect. 24 17
94 19.70 wind 9 14400 > th dose independent rect. 3 14
97 19.70 wind 9 14400 > th dose dependent sin 4 NA
98 19.70 humidity 60 43200 < th dose dependent rect. 17 17
99 19.71 wind 9 14400 < th dose independent sin 4 NA
103 19.71 wind 9 14400 > th dose dependent rect. 23 18
104 19.72 humidity 60 43200 > th dose independent rect. 18 1
108 19.72 wind 9 14400 > th dose dependent rect. 9 8
111 19.72 wind 9 14400 > th dose dependent rect. 5 12
120 19.73 wind 9 14400 > th dose independent rect. 9 8
125 19.73 wind 9 14400 < th dose independent rect. 1 13
126 19.73 radiation 1 43200 > th dose dependent rect. 17 1
130 19.74 wind 9 14400 < th dose independent rect. 3 10
157 19.77 humidity 60 43200 < th dose independent rect. 18 1
165 19.77 wind 9 14400 < th dose independent rect. 1 16
177 19.78 wind 9 14400 < th dose independent rect. 9 8
181 19.78 wind 9 14400 < th dose independent rect. 3 14
216 19.80 radiation 10 14400 > th dose dependent rect. 17 13
250 19.82 wind 9 14400 < th dose independent rect. 21 20
295 19.86 humidity 50 43200 < th dose independent rect. 17 18
344 19.88 humidity 50 43200 > th dose independent rect. 16 20
378 19.89 radiation 20 43200 < th dose dependent rect. 17 1
381 19.89 humidity 70 43200 < th dose dependent rect. 19 13
397 19.90 radiation 30 43200 < th dose dependent rect. 16 15
403 19.91 humidity 50 43200 < th dose dependent rect. 9 1
404 19.91 humidity 60 43200 < th dose dependent rect. 18 1
409 19.91 radiation 10 43200 < th dose dependent rect. 16 15
412 19.92 radiation 20 43200 < th dose independent rect. 16 1
416 19.92 humidity 50 43200 < th dose independent rect. 16 20
421 19.92 wind 1 43200 < th dose dependent rect. 20 7
439 19.93 radiation 20 43200 < th dose independent rect. 16 8
461 19.94 wind 1 43200 < th dose dependent rect. 18 9
471 19.95 humidity 50 43200 > th dose independent rect. 17 18
513 19.97 wind 7 43200 > th dose dependent rect. 14 1
516 19.97 humidity 50 43200 < th dose dependent rect. 3 8
557 19.98 humidity 70 43200 < th dose dependent rect. 18 15
648 20.03 humidity 50 43200 < th dose independent sin 10 NA
672 20.03 temperature 25 1440 > th dose dependent sin 11 NA
677 20.03 humidity 90 14400 > th dose dependent rect. 2 3
715 20.04 wind 5 4320 < th dose dependent rect. 21 1
748 20.05 humidity 60 43200 < th dose dependent sin 10 NA
762 20.06 humidity 50 43200 < th dose independent rect. 9 1
773 20.06 radiation 10 43200 < th dose dependent sin 12 NA
791 20.07 humidity 50 43200 > th dose independent sin 11 NA
792 20.07 atmosphere 1010 14400 > th dose independent rect. 7 1
814 20.07 radiation 10 43200 < th dose dependent rect. 4 3
938 20.11 atmosphere 1010 14400 < th dose independent rect. 6 2
953 20.11 radiation 40 43200 < th dose dependent rect. 23 7
988 20.12 wind 1 4320 < th dose dependent rect. 18 12
992 20.13 radiation 10 43200 < th dose independent sin 13 NA