BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0473900 Os05g0473900|AK064856
         (281 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01490.1  | chr2:221316-223187 FORWARD LENGTH=284              377   e-105

>AT2G01490.1 | chr2:221316-223187 FORWARD LENGTH=284
          Length = 283

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/277 (64%), Positives = 223/277 (80%), Gaps = 1/277 (0%)

Query: 4   AGSLTDKQLHFFDANGYLVLGSFSSAEEVKAMRDRMAVLIDGFD-GAGDVFSTKDHRQVK 62
            GSLT  QL FF + GYLV+ SF+S +E++ +R RM  L++ FD     +FSTK+ +   
Sbjct: 4   TGSLTPDQLDFFHSQGYLVIESFASEDEIRGLRKRMDELLNQFDCSVSSIFSTKNQKHTT 63

Query: 63  NDFFFKSAENISFFFEEKAFGDDGCLKQAKELSINKVGHALHELDPVFKKFSFGENVSSL 122
           +++FF+SAE ISFFFEEKAFGDDG LKQ K+LSINKVGHALHELDP++K F++    SSL
Sbjct: 64  DNYFFESAEKISFFFEEKAFGDDGKLKQPKQLSINKVGHALHELDPLYKDFTYSSKFSSL 123

Query: 123 FSSLRYKRPAVIQSMYIFKQPGIGGEVVPHQDNTFLYTNPPSCTGLWLALEDATKTNGCL 182
            SSL Y+RP V+QSMYIFKQPGIGGEVVPHQDN+F+YT+P SCTGLW+ALED+T  NGCL
Sbjct: 124 ASSLGYRRPVVMQSMYIFKQPGIGGEVVPHQDNSFVYTDPQSCTGLWIALEDSTLVNGCL 183

Query: 183 WAIPGSHKNGLKRRMIRDENDTHFDHPSPTYDLKEFVPLEVKSGDLVVIHGDLVHQSFEN 242
           WAIPGSHKNGL RR IR +N   FD PSP+Y+ K+FV +E+K+G L+ IHGDL+HQSFEN
Sbjct: 184 WAIPGSHKNGLVRRFIRGDNGITFDQPSPSYEQKDFVSIEMKAGSLIAIHGDLIHQSFEN 243

Query: 243 LSLVSRHALSLHVIDTEGCEWSKQNWLQRKIPPQPLY 279
           LS  SRHA SLHV++++GC+W+K NW+QR   P+PLY
Sbjct: 244 LSSKSRHAYSLHVVESDGCKWAKDNWIQRAKMPEPLY 280



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,906,098
Number of extensions: 304220
Number of successful extensions: 648
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)