BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0466700 Os05g0466700|Os05g0466700
         (152 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0466700  Conserved hypothetical protein                      315   1e-86
Os01g0833400  Conserved hypothetical protein                      208   9e-55

>Os05g0466700 Conserved hypothetical protein
          Length = 152

 Score =  315 bits (806), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MVRTPERSYSCSSAKEVAYSCGYCGYALNLSSSTRNTANIGSKYGKQIRKGVISFFAIDE 60
           MVRTPERSYSCSSAKEVAYSCGYCGYALNLSSSTRNTANIGSKYGKQIRKGVISFFAIDE
Sbjct: 1   MVRTPERSYSCSSAKEVAYSCGYCGYALNLSSSTRNTANIGSKYGKQIRKGVISFFAIDE 60

Query: 61  SRFTQTDEVSCMPYFHSRRSWGLFRKRTRLICRKCGGRIGNAYEDEDSTLYDGSDDLHMS 120
           SRFTQTDEVSCMPYFHSRRSWGLFRKRTRLICRKCGGRIGNAYEDEDSTLYDGSDDLHMS
Sbjct: 61  SRFTQTDEVSCMPYFHSRRSWGLFRKRTRLICRKCGGRIGNAYEDEDSTLYDGSDDLHMS 120

Query: 121 SEGYSMSSGKKYVIKINALQPSTDDSGVPFTL 152
           SEGYSMSSGKKYVIKINALQPSTDDSGVPFTL
Sbjct: 121 SEGYSMSSGKKYVIKINALQPSTDDSGVPFTL 152



>Os01g0833400 Conserved hypothetical protein
          Length = 157

 Score =  208 bits (530), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 129/160 (80%), Gaps = 11/160 (6%)

Query: 1   MVRTPERSYSCSSAKEVAYSCGYCGYALNLSSSTRNTANIGSKYGKQIRKGVISFFAIDE 60
           MVR+ +   S  S K+V YSCGYCGYALNLSSSTRNTANIGSKYGKQI+KGV+SFFA+DE
Sbjct: 1   MVRSLD---SYPSIKDVTYSCGYCGYALNLSSSTRNTANIGSKYGKQIKKGVVSFFAVDE 57

Query: 61  SRFTQTDEVSCMPYFHSRRSWGLFRKRTRLICRKCGGRIGNAYEDEDSTLY-----DGSD 115
           SRFTQ DEV+C+PYFHSRRSWGLFR+R+RL+CRKCGGRIG+AYE+++         DG D
Sbjct: 58  SRFTQADEVTCVPYFHSRRSWGLFRRRSRLLCRKCGGRIGSAYEEDEPAAAALPACDGPD 117

Query: 116 DLHMSSEGYSMSSG--KKYVIKINALQPSTDDS-GVPFTL 152
           DL  +S G S S+   K YVIKINALQPS+DDS  V FTL
Sbjct: 118 DLRTTSSGSSGSASSQKNYVIKINALQPSSDDSDAVAFTL 157



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,417,677
Number of extensions: 212410
Number of successful extensions: 437
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 3
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)