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Os01g0833400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0193) R2 : 0.497
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.977 (0.0461) R2dC : 0.498 R2C : 0.495
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0513 (0.0405) R2dN8 : 0.00229 R2N8 : -0.000581
σ : 0.363
deviance : 60.23
__
_____
C
peak time of C : 22.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.78 0.296 10 0.624 0.98 1.14 0.166 -1.42 0.0748 23.5 58.33 178 -- --
40.34 0.296 10 0.648 0.982 0.928 0.276 -- 0.0696 23.4 57.82 182 -- --
39.86 0.294 10 0.61 0.973 1.2 -- -1.69 0.0712 23.4 57.78 175 -- --
40.6 0.297 10 0.638 0.977 0.898 -- -- 0.0658 23.4 58 189 -- --
76.49 0.407 10 0.544 -- 1.12 -- -0.861 0.0524 -- 89 878 -- --
46.76 0.321 10.1 0.718 0.973 -- 0.212 -- 0.0284 22.9 -- -- -- --
46.95 0.321 10.1 0.71 0.971 -- -- -- 0.0277 22.9 -- -- -- --
76.72 0.408 10 0.642 -- 1.04 -- -- 0.0408 -- 89.38 870 -- --
51.05 0.333 10.1 -- 0.978 1.14 -- -- 0.0066 23.5 56.94 195 -- --
105.52 0.48 10 0.731 -- -- -- -- 0.0344 -- -- -- -- --
60.23 0.363 10.1 -- 0.977 -- -- -- -0.0513 22.9 -- -- -- --
87.01 0.434 10 -- -- 1.13 -- -- 0.00121 -- 84.55 903 -- --
119.6 0.51 10 -- -- -- -- -- -0.0467 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.71 humidity 60.0 270 > th dose independent rect. 18 21
4 37.11 humidity 50.0 270 > th dose independent rect. 4 10
8 37.54 humidity 50.0 10 > th dose independent rect. 20 20
11 37.78 atmosphere 1000.0 10 > th dose independent rect. 2 18
45 38.59 temperature 10.0 270 > th dose dependent rect. 15 2
47 38.64 temperature 25.0 270 > th dose independent rect. 15 2
48 38.66 wind 9.0 270 < th dose independent rect. 4 10
52 38.72 humidity 50.0 30 > th dose dependent rect. 20 20
53 38.74 temperature 10.0 270 > th dose independent rect. 4 10
54 38.74 atmosphere 995.0 270 > th dose independent rect. 4 10
55 38.74 atmosphere 1015.0 270 < th dose independent rect. 4 10
56 38.74 temperature 10.0 270 > th dose independent rect. 14 14
57 38.74 humidity 60.0 270 > th dose independent rect. 5 19
58 38.76 humidity 60.0 270 > th dose independent rect. 9 15
69 38.82 atmosphere 1000.0 10 > th dose independent rect. 24 20
70 38.82 temperature 10.0 90 > th dose dependent rect. 15 5
80 38.93 precipitation 0.1 270 < th dose independent rect. 4 10
81 38.93 precipitation 0.1 270 < th dose dependent rect. 4 10
87 38.96 wind 9.0 270 < th dose independent rect. 17 22
95 39.04 wind 7.0 270 < th dose independent rect. 15 2
97 39.05 wind 9.0 270 < th dose independent rect. 14 14
110 39.12 atmosphere 995.0 90 > th dose independent rect. 19 21
112 39.13 temperature 10.0 270 > th dose independent rect. 15 2
114 39.13 atmosphere 1010.0 270 < th dose independent rect. 15 2
117 39.13 temperature 10.0 270 > th dose independent rect. 17 22
122 39.16 radiation 1.0 270 > th dose independent rect. 15 2
123 39.16 wind 1.0 270 > th dose independent rect. 14 14
129 39.20 wind 1.0 270 > th dose independent rect. 15 2
132 39.20 atmosphere 995.0 10 > th dose independent rect. 20 20
133 39.21 radiation 40.0 270 < th dose independent rect. 15 2
147 39.27 humidity 50.0 10 > th dose independent rect. 6 10
154 39.31 precipitation 0.1 270 < th dose independent rect. 15 2
156 39.31 precipitation 0.1 270 < th dose dependent rect. 15 2
157 39.32 temperature 15.0 90 > th dose independent rect. 19 7
177 39.43 humidity 90.0 270 < th dose independent rect. 15 2
179 39.44 precipitation 0.1 270 < th dose independent rect. 17 22
181 39.44 precipitation 0.1 270 < th dose dependent rect. 17 22
185 39.48 temperature 20.0 10 > th dose independent rect. 16 4
186 39.48 precipitation 0.1 90 < th dose independent rect. 19 7
188 39.48 precipitation 0.1 90 < th dose independent rect. 19 20
189 39.48 precipitation 0.1 90 < th dose dependent rect. 19 7
190 39.48 precipitation 0.1 90 < th dose dependent rect. 19 20
191 39.49 atmosphere 995.0 270 > th dose independent rect. 15 2
192 39.49 atmosphere 1000.0 10 > th dose independent rect. 16 4
198 39.53 temperature 15.0 10 > th dose independent rect. 20 20
203 39.56 wind 7.0 90 < th dose independent rect. 15 4
206 39.56 temperature 15.0 90 > th dose independent rect. 2 17
212 39.57 humidity 90.0 270 < th dose dependent rect. 15 1
214 39.59 temperature 15.0 10 > th dose independent rect. 20 6
215 39.59 wind 9.0 270 < th dose dependent rect. 15 2
224 39.62 wind 9.0 90 < th dose independent rect. 19 20
225 39.62 humidity 60.0 270 < th dose dependent sin 2 NA
226 39.63 radiation 40.0 90 < th dose independent rect. 15 4
230 39.65 temperature 10.0 90 > th dose independent rect. 15 4
232 39.65 atmosphere 1010.0 90 < th dose independent rect. 15 4
235 39.65 temperature 10.0 90 > th dose independent rect. 19 20
241 39.67 humidity 60.0 270 < th dose dependent rect. 18 22
242 39.68 wind 9.0 90 < th dose independent rect. 19 7
244 39.68 temperature 30.0 90 < th dose independent rect. 19 7
245 39.68 humidity 50.0 90 > th dose independent rect. 19 7
247 39.68 atmosphere 995.0 90 > th dose independent rect. 19 7
248 39.68 radiation 1.0 90 < th dose independent rect. 19 7
254 39.68 atmosphere 1015.0 90 < th dose independent rect. 2 17
256 39.68 radiation 1.0 90 < th dose dependent rect. 19 7
264 39.70 atmosphere 1000.0 90 > th dose independent rect. 15 4
266 39.70 humidity 50.0 10 > th dose dependent rect. 10 16
269 39.72 humidity 60.0 270 < th dose dependent rect. 8 8
291 39.73 humidity 50.0 10 > th dose dependent rect. 8 18
293 39.74 wind 1.0 90 > th dose independent rect. 15 4
295 39.74 radiation 40.0 270 < th dose independent rect. 14 14
310 39.77 precipitation 0.1 270 < th dose independent rect. 14 14
313 39.77 precipitation 0.1 270 < th dose dependent rect. 14 14
353 39.83 temperature 15.0 270 > th dose independent rect. 19 4
369 39.85 radiation 1.0 1440 < th dose dependent rect. 21 6
385 39.88 wind 9.0 10 < th dose independent rect. 20 20
392 39.90 wind 9.0 10 < th dose independent rect. 20 6
396 39.90 wind 9.0 90 < th dose independent rect. 2 17
397 39.90 temperature 15.0 270 > th dose independent rect. 24 18
409 39.91 temperature 30.0 10 < th dose independent rect. 20 6
410 39.91 humidity 50.0 10 > th dose independent rect. 20 6
413 39.91 atmosphere 995.0 10 > th dose independent rect. 20 6
414 39.91 radiation 1.0 10 < th dose independent rect. 20 6
420 39.91 temperature 10.0 10 > th dose independent rect. 2 18
423 39.91 atmosphere 1015.0 10 < th dose independent rect. 2 18
425 39.91 radiation 1.0 10 < th dose dependent rect. 20 6
436 39.92 humidity 50.0 270 > th dose dependent rect. 9 15
440 39.94 temperature 10.0 10 > th dose independent rect. 16 4
442 39.94 atmosphere 1010.0 10 < th dose independent rect. 16 4
444 39.94 radiation 40.0 10 < th dose independent rect. 16 4
483 39.98 wind 1.0 10 > th dose independent rect. 16 4
493 39.99 temperature 10.0 90 > th dose dependent rect. 5 10
504 40.00 precipitation 0.1 10 < th dose independent rect. 20 6
510 40.00 atmosphere 1015.0 270 < th dose independent rect. 24 18
517 40.00 precipitation 0.1 10 < th dose dependent rect. 20 6
522 40.01 humidity 50.0 10 > th dose dependent rect. 20 6
523 40.01 humidity 60.0 90 < th dose dependent rect. 14 22
531 40.03 atmosphere 995.0 270 > th dose independent rect. 14 14
537 40.04 wind 1.0 270 > th dose independent rect. 5 9
542 40.04 radiation 1.0 270 < th dose dependent rect. 7 17
552 40.05 atmosphere 995.0 270 > th dose independent rect. 17 22
567 40.08 atmosphere 1010.0 10 < th dose independent rect. 20 6
574 40.08 radiation 1.0 270 < th dose dependent rect. 9 15
585 40.09 humidity 50.0 90 > th dose dependent rect. 19 7
587 40.10 wind 9.0 10 < th dose independent rect. 16 4
604 40.10 precipitation 0.1 10 < th dose independent rect. 20 20
610 40.10 precipitation 0.1 10 < th dose dependent rect. 20 20
612 40.11 radiation 30.0 10 < th dose independent rect. 14 6
613 40.11 radiation 1.0 90 > th dose independent rect. 5 10
622 40.11 wind 9.0 10 < th dose independent rect. 2 18
641 40.13 precipitation 0.1 270 < th dose independent rect. 24 18
645 40.13 precipitation 0.1 270 < th dose dependent rect. 24 18
657 40.15 temperature 15.0 270 > th dose independent rect. 23 20
661 40.16 wind 9.0 270 < th dose independent rect. 19 4
666 40.16 atmosphere 995.0 270 > th dose independent rect. 19 4
667 40.16 radiation 1.0 270 < th dose independent rect. 19 4
675 40.16 wind 9.0 270 < th dose independent rect. 24 18
677 40.16 radiation 1.0 270 < th dose dependent rect. 19 4
686 40.17 precipitation 0.1 270 < th dose independent rect. 19 4
692 40.17 precipitation 0.1 270 < th dose dependent rect. 19 4
725 40.20 precipitation 0.1 10 < th dose independent rect. 16 4
726 40.20 radiation 30.0 270 > th dose independent rect. 15 17
728 40.20 precipitation 0.1 10 < th dose dependent rect. 16 4
732 40.20 radiation 40.0 43200 < th dose dependent rect. 21 6
737 40.21 temperature 10.0 1440 > th dose independent rect. 21 6
740 40.21 temperature 30.0 1440 < th dose independent rect. 21 6
744 40.21 humidity 50.0 1440 > th dose independent rect. 21 6
750 40.21 atmosphere 995.0 1440 > th dose independent rect. 21 6
751 40.21 radiation 1.0 1440 < th dose independent rect. 21 6
772 40.21 temperature 10.0 1440 > th dose independent rect. 3 18
776 40.21 temperature 10.0 90 > th dose dependent rect. 20 19
813 40.24 atmosphere 1015.0 90 < th dose independent rect. 19 7
814 40.24 atmosphere 1015.0 90 < th dose independent rect. 20 19
846 40.25 radiation 1.0 270 < th dose independent rect. 7 17
849 40.25 radiation 1.0 270 > th dose dependent rect. 15 1
858 40.26 atmosphere 1015.0 270 < th dose independent rect. 19 4
879 40.27 atmosphere 995.0 270 > th dose dependent rect. 15 2
910 40.28 wind 9.0 10 < th dose dependent rect. 20 6
928 40.29 radiation 1.0 270 < th dose independent rect. 9 15
944 40.30 humidity 60.0 270 < th dose dependent no NA NA
946 40.30 wind 9.0 90 < th dose dependent rect. 19 7